Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   2.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.4  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +1

Query: 190 NNSELEYKIKWK*YRTLWPDGDM 258
           NN++  Y++++K    ++P+GD+
Sbjct: 117 NNADGNYEVRYKSNVLIYPNGDV 139


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 44 MTIDEFKKLIKN 79
          MTI+E KK IKN
Sbjct: 1  MTIEELKKTIKN 12


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 139 RQLNHPENGXRKFFKXPNNSELE 207
           R ++   NG   + K PN+ ELE
Sbjct: 225 RMVDENINGFDPYVKTPNDEELE 247


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding
          protein ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 44 MTIDEFKKLIKN 79
          MTI+E KK IKN
Sbjct: 27 MTIEEAKKTIKN 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 428 STSTAPRPHART 393
           STST+PRP + T
Sbjct: 837 STSTSPRPASST 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,250
Number of Sequences: 438
Number of extensions: 1603
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)