Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27520.1 68418.m03293 mitochondrial substrate carrier family ...    27   5.6  
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr...    27   5.6  
At5g62380.1 68418.m07829 no apical meristem (NAM) family protein...    27   7.4  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    27   7.4  
At2g03880.1 68415.m00350 pentatricopeptide (PPR) repeat-containi...    26   9.8  
At1g32190.1 68414.m03959 expressed protein                             26   9.8  
At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM ...    26   9.8  

>At5g27520.1 68418.m03293 mitochondrial substrate carrier family
           protein
          Length = 321

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  ITVP*IKLAVNAISEDQLNKTSAKSPRKRXKKVL 179
           IT P I+  V   + D   +  AK PRKR +K +
Sbjct: 223 ITYPAIRCKVMIQAADDSKENEAKKPRKRIRKTI 256


>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 821

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 299 IKIVESHGGQVVANYDESCWCC-VSGRCTSGGACVRAGAAXWTC 427
           ++I  ++G   + +++     C + GRC   G CVR+G     C
Sbjct: 259 LRITRNNGTDWIKHFEGPLTSCDLYGRCGPFGLCVRSGTPMCQC 302


>At5g62380.1 68418.m07829 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           OsNAC7, Oryza sativa, EMBL:AB028186
          Length = 348

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 7   RTPASRQAGQRRHDY*RIQKTDKESQSRE*SWLLTQSVKISLTKRQLNHP 156
           R P  +++    H+Y R++ TD+     E  W++ ++ K  LT    N+P
Sbjct: 119 RAPNGQKSDWIMHEY-RLE-TDENGPPHEEGWVVCRAFKKKLTTMNYNNP 166


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 148 NHPENGXRKFFKXPNNSE 201
           N P+N  RKF+K PN  E
Sbjct: 109 NTPKNPGRKFYKCPNREE 126


>At2g03880.1 68415.m00350 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 630

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 248 TEICILSYEEDCSRT-ELIKIVESHGGQV-VANYDESCWCCVSGRCTSGG 391
           +E   L Y+ D  R  + +  ++SHG     A Y E   CC+S R    G
Sbjct: 31  SEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEG 80


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 326 QVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
           Q +   DES  CC SG C    +C +      +C
Sbjct: 284 QEIRRRDESTGCCCSGLCRPSCSCPKPRCPKPSC 317


>At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 226

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 FRTGIQDKVEVISNALAGRRYAFCH 269
           FR  +Q+ ++ ++NA   RRY F H
Sbjct: 165 FRRSMQEMIDAVTNAGDLRRYEFLH 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,535,854
Number of Sequences: 28952
Number of extensions: 130988
Number of successful extensions: 332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)