Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1362
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 102 4e-23
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 91 1e-19
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 84 2e-17
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 79 8e-16
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 76 4e-15
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 71 1e-13
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 58 9e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 51 2e-07
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 48 1e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 2e-05
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 2.0
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 27 2.0
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 102 bits (245), Expect = 4e-23
Identities = 54/85 (63%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA-AKRMVEFEEAQ 178
R A AIVVYDIT + +AK+W+KELQRQA IVIALAGNK DLA +R VE +A+
Sbjct: 86 RNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAE 145
Query: 179 AYADENGLLFMETSAKTAMNVNDIF 253
AYA E LLF ETSAKTA NVN++F
Sbjct: 146 AYAAEANLLFFETSAKTAENVNELF 170
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 91.1 bits (216), Expect = 1e-19
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
RGA A++VYDIT Q +F W+KEL+ A +IVI L GNK+DL R V EEAQA
Sbjct: 81 RGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQA 140
Query: 182 YADENGLLFMETSAKTAMNVNDIF 253
+A EN L F+ETSA A NV + F
Sbjct: 141 FAAENNLSFIETSAMDASNVEEAF 164
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 83.8 bits (198), Expect = 2e-17
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
RGA I+VYD+T+QD+F K W++E+ R A + L GNKSD+ K++VE+ A+
Sbjct: 79 RGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKE 138
Query: 182 YADENGLLFMETSAKTAMNVNDIF 253
+AD + F+ETSAK + NV F
Sbjct: 139 FADSLNIPFLETSAKDSTNVEQAF 162
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 78.6 bits (185), Expect = 8e-16
Identities = 34/84 (40%), Positives = 54/84 (64%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
RGA +++YD+T++ +F + W +++ AS ++ L GNK D +R V FE+ QA
Sbjct: 80 RGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQA 139
Query: 182 YADENGLLFMETSAKTAMNVNDIF 253
ADE G+ F+E SAKT +NV++ F
Sbjct: 140 LADELGVKFLEASAKTNVNVDEAF 163
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 76.2 bits (179), Expect = 4e-15
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
R + AI+VYDITN ++F + W+++++ + ++I L GNK+DLA KR V EE +
Sbjct: 82 RDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEK 141
Query: 182 YADENGLLFMETSAKTAMNVNDIF 253
A E ++ METSAK NV +F
Sbjct: 142 KAKELKIMHMETSAKAGHNVKLLF 165
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
RGA A++VYD+TN+D+F +W+ +++ A +I + LAG+KSDL +R V EEA
Sbjct: 84 RGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAE 143
Query: 182 YADENGLLFM-ETSAKTAMNVNDIF 253
+ E + ETS+ T NV + F
Sbjct: 144 FCSEKHISSAHETSSYTGSNVEECF 168
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 58.4 bits (135), Expect = 9e-10
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPS----IVIALAGNKSDL-AAKRMVEF 166
RGA ++VYD+ N +F +W E QASPS L GNK D+ KRMV
Sbjct: 79 RGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSK 138
Query: 167 EEAQAYADENG-LLFMETSAKTAMNVNDIF 253
+A A+ G + + ETSAK A+NV + F
Sbjct: 139 SKALAFCQARGEIPYFETSAKEAINVQEAF 168
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQR-QASPSIVIALAGNKSDLAAKRMVEFEEAQ 178
R + ++VY+IT++ +F + +++ R + + + L NK DL A+R+V E +
Sbjct: 78 RTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGE 137
Query: 179 AYADENGLLFMETSAKTAMNVNDIF 253
A L++ETSAK +NV + F
Sbjct: 138 QLAKSMHCLYVETSAKLRLNVEEAF 162
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 48.4 bits (110), Expect = 1e-06
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +2
Query: 2 RGAQSAIVVYDITNQDTFGRAKNWVKELQRQASP---SIVIALAGNKSDL-AAKRMVEFE 169
RGA ++VY++ N +F +NW +E Q S + + GN+ D A+KR V
Sbjct: 79 RGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLH 138
Query: 170 EAQAYADE---NGLLFMETSAKTAMNVNDIF 253
A Y + ++ E SAK NV D+F
Sbjct: 139 RALDYCKSKHGSNMIHFEASAKENTNVTDLF 169
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 GAQSAIVVYDITNQDTFGRAKNWV-KELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQA 181
G ++VY IT++ +F K K L + + I + GNKSDL +R V EE +A
Sbjct: 77 GIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKA 136
Query: 182 YADENGLLFMETSAKTAMNVNDIFPL 259
A+E + E SA+ NV F L
Sbjct: 137 LANEWKCAWTEASARHNENVARAFEL 162
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -2
Query: 706 LWRKQDHFNQKNNFNRSSC---XNITPITVHGASFCVLAICAHLFLWLRM 566
+WR++ HF N R +C +I IT+ SF + + +F+W+R+
Sbjct: 265 VWRRRIHFETSFNIIRLACRVIADIPQITLIFISF-LFSFYVLIFIWVRL 313
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Frame = +2
Query: 65 KNWVKELQRQASPSIVIALAGNKSDLAAKRM------------VEFEEAQAYADENGLLF 208
+ W E+Q P I L G K+DL R V +++AQ+ A +
Sbjct: 108 EKWYPEVQHFC-PRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPY 166
Query: 209 METSAKTAMNVNDIFPL 259
+E SAK VN++F L
Sbjct: 167 VECSAKENTGVNEVFQL 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,933
Number of Sequences: 5004
Number of extensions: 37317
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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