Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1361
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 261 EEYEEAEYYPQGFNFF 308
           EEY +  Y P G +FF
Sbjct: 35  EEYNQNSYIPPGGDFF 50


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 261 EEYEEAEYYPQGFNFF 308
           EEY +  Y P G +FF
Sbjct: 35  EEYNQNSYIPPGGDFF 50


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 163 IAHCFIFCYVWCIGG 207
           + +C+I C ++ IGG
Sbjct: 216 VPYCYINCLIYLIGG 230


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 261 EEYEEAEYYPQGFNFF 308
           EEY +  Y P G +FF
Sbjct: 35  EEYNQNSYIPPGGDFF 50


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 261 EEYEEAEYYPQGFNFF 308
           EEY +  Y P G +FF
Sbjct: 35  EEYNQNSYIPPGGDFF 50


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 514 SGRDSKQNVVDGILCAGHIEFLGSNKQPSHAG 609
           +G      V  G++    ++FLG N   S  G
Sbjct: 63  TGESEMMVVTSGVIPGVAVDFLGENNDDSGGG 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,377
Number of Sequences: 336
Number of extensions: 3994
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)