Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1361
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    35   0.011
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.8  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.9  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   6.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.6  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   8.6  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +3

Query: 402  TLVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKTV*RSRF*TECR*RDIMCRSY*IS- 578
            T++PT+DTVRY       L   + V+F G  G GK++         +  +++  ++ IS 
Sbjct: 2492 TVIPTLDTVRYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSIST 2551

Query: 579  RLKQXXXXXXXXXSYA*IKGPEKQSELPLGKKIIIFIDDVNMPKLRCILA 728
              K           Y    G          K +++F D++N+P+ R  LA
Sbjct: 2552 SSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVLFCDEINLPRSRNCLA 2601


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 163 IAHCFIFCYVWCIGGNILEMNRQSFEEV 246
           +A C IFC  + +  N+LE N+    E+
Sbjct: 1   MASCCIFCAQFVLNRNLLEANKYKLSEI 28


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 722 YTS*FGHVHIVYKYNYLLTKRKLRLLFWAFYLSVTQ*PPACEGCLFEPRNSI*PAHNIPS 543
           Y+  F +  I Y Y  +L K +L ++++ +YL +      C    F P   I P H  P 
Sbjct: 42  YSIPFFYDRICYDYKNILLKYELFIIYYYYYLLI------CLSPHFFPIKRIRPFHENPL 95

Query: 542 TTF 534
            +F
Sbjct: 96  HSF 98


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 360 IPEFIYDCNKPFFETLVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKTV*RS 521
           + +F+ +C  P     V + D  R G      +   K V FTG+TGVG+ V R+
Sbjct: 206 LTKFVPECGFPPGVINVLSGDGRRCGNAISSHMDIDK-VAFTGSTGVGRMVMRA 258


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 405  LVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKT 509
            +V T   +R   L  + L A +PV+  G+TG GKT
Sbjct: 1166 VVWTRPMIRLFCLVWRCLLAKEPVLLVGDTGCGKT 1200


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 205 GNILEMNRQSFEEVIKRNLKNTKKPNITLRVSISL 309
           G I  ++   FEE+ K  LK  K PN T+ VSISL
Sbjct: 125 GIIPHISESIFEEIDK--LKK-KSPNTTITVSISL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,662
Number of Sequences: 5004
Number of extensions: 68422
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)