Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1361
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664...    30   2.2  
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    29   5.2  
01_06_0221 - 27653591-27653724,27654270-27654473,27655216-276553...    28   9.0  

>04_03_1034 -
           21865633-21865811,21865838-21865860,21866345-21866433,
           21872484-21872894,21872968-21873284,21873389-21873467,
           21873539-21873903,21874484-21874656,21874824-21874913,
           21875797-21875862,21876615-21876661
          Length = 612

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 294 GFNFFDMYMDTRQRKLKV----WAEIIPEFIYDCNKPFFETLVPTIDTVRYG 437
           G  +F M++  ++RKLKV    WAE + +F+   +K  F + + T+    YG
Sbjct: 364 GGGYF-MFLQNKRRKLKVTLVTWAEYLCDFLEMTSKEEFSSSLSTVRRGHYG 414


>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 704 HVHIVYKYNYLLTKRKLRLLFWAFYLSVTQ*PPACEGCLFEPRNSI*PAHNIP 546
           ++H V KY   +      L F++F+  ++       GC +E R+S  PAH  P
Sbjct: 91  YLHFVKKYQRQVNNYGFYLCFFSFFFPISD-----LGCRYEKRHSNIPAHVSP 138


>01_06_0221 -
           27653591-27653724,27654270-27654473,27655216-27655315,
           27655728-27655888,27656846-27656930,27657548-27657614,
           27658434-27658541,27658639-27658704,27659341-27659387,
           27659497-27659691,27659833-27659877
          Length = 403

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 426 VRYGYLFEKLLGAGKPVMFTGNTGVGKTV*RSRF*TECR 542
           ++Y   F+ LL   K ++  G  G GKT+      TEC+
Sbjct: 150 IKYPKYFKGLLSPWKGILLFGPPGTGKTMLAKAVATECK 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,332
Number of Sequences: 37544
Number of extensions: 419626
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)