Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1361
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    36   0.030
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    36   0.030
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   6.1  
U39674-6|AAA80416.1|  291|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   6.1  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 399  ETLVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKTV 512
            + +VPTIDTVR+  L    L   KP++  G  G GKT+
Sbjct: 2508 DLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTM 2545


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 399  ETLVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKTV 512
            + +VPTIDTVR+  L    L   KP++  G  G GKT+
Sbjct: 2508 DLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTM 2545


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 505  LPTPVFPVNMTGLPAPRSFSNKYP 434
            +P P+FP NM  +P+P   + +YP
Sbjct: 1584 VPYPLFPPNMVAVPSPMPSNIRYP 1607


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
            protein F41G3.12 protein.
          Length = 1483

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 72   QQSECAVLPAGCATRRARRSICG*SCVEDLYRSLLHILLCV 194
            +  EC  L A C TR  R+S+C   C +D ++S  H+ +C+
Sbjct: 931  RHEECEKLSAQCITRPGRKSVC--DC-DDGWKS--HLGICI 966


>U39674-6|AAA80416.1|  291|Caenorhabditis elegans Hypothetical
           protein C06E2.1 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 90  VLPAGCATRRARRSICG*SCVEDLYRSLLHILLCVVY 200
           VLP       ARR +   S +E   RSLLHILL  V+
Sbjct: 152 VLPLSSVVELARRILMDYSNLEPDERSLLHILLTEVF 188


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 72  QQSECAVLPAGCATRRARRSICG*SCVEDLYRSLLHILLCV 194
           +  EC  L A C TR  R+S+C   C +D ++S  H+ +C+
Sbjct: 880 RHEECEKLSAQCITRPGRKSVC--DC-DDGWKS--HLGICI 915


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,210
Number of Sequences: 27780
Number of extensions: 383517
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)