Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1360
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21...    29   2.9  
At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family prot...    28   6.7  

>At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575
          Length = 270

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 652 SV*WTGLFALXLGCLLSIYGIHTNG-IYISTY 560
           SV ++GLF   LG ++  +G+H  G +YIS +
Sbjct: 171 SVIYSGLFDTSLGSVIHTWGLHVKGPVYISLF 202


>At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich protein APG from
           Brassica napus (SP|P40603 ), Arabidopsis thaliana
           (GI:22599); contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 107 PGSMISVSRDT*VFFSCFHPSLLVAFL 27
           PGS+   + DT +FF  FHP+ L  ++
Sbjct: 323 PGSIACKAPDTHIFFDPFHPTQLANYM 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544,926
Number of Sequences: 28952
Number of extensions: 186089
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)