Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1359
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 33 0.037
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 32 0.086
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 31 0.11
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 31 0.15
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 29 0.46
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 28 1.1
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 28 1.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 1.9
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 1.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.5
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 26 4.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 26 5.7
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 5.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 7.5
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 33.1 bits (72), Expect = 0.037
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQ 340
++ +R + + FSCS C+ F + RHV+Q H Q
Sbjct: 44 RRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQ 81
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.9 bits (69), Expect = 0.086
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 441 RRYRTERPFSCSQCSARFTLRSNMERHVKQQH 346
R + + F C CS+ FT + RHV Q+H
Sbjct: 39 RSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 441 RRYRTERPFSCS--QCSARFTLRSNMERHVK 355
R + E+PF CS C RFT R + RHV+
Sbjct: 24 RSHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 429 TERPFSCSQCSARFTLRSNMERH 361
++R F C QC+ RFT N+ RH
Sbjct: 27 SKRVFPCDQCAKRFTRHENLTRH 49
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 426 ERPFSCSQ--CSARFTLRSNMERH 361
ERPF C C F +RSNM RH
Sbjct: 493 ERPFVCDYAGCGKAFNVRSNMRRH 516
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 435 YRTERPFSCS--QCSARFTLRSNMERHVKQQH 346
Y+ R +SCS +C+ RF +M RH+ H
Sbjct: 343 YKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQ--CSARFTLRSNMERHVK 355
K +R + +PFSC C A+F + ++ERH++
Sbjct: 71 KIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIE 105
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQ-------CSARFTLRSNMERHVKQQH--PQHWSVRRPAQRGPP 301
K+ R + E+PF+CS+ C +F+ R + RH ++ H PQ RR P
Sbjct: 86 KRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQPRRRRRSTTALPN 145
Query: 300 PYTS 289
P S
Sbjct: 146 PSLS 149
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 423 RPFSCSQCSARFTLRSNMERHVKQQH 346
+ F C +CS +F ++ RH++ H
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 429 TERPFSCSQCSARFTLRSNMERHVK 355
++RP+ C C A F +++RH++
Sbjct: 469 SDRPYRCDLCKAGFVRHHDLKRHLR 493
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 423 RPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRG--PPPYTST 286
+ F+C C+ RF + RH K + Q+ +R +RG PP T
Sbjct: 626 KAFACVTCNQRFARMDALNRHYKSEVGQN-CLRTATERGIQVPPSRKT 672
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQH 346
K + RPF CS C F + + RH +Q H
Sbjct: 588 KSHMNTHTNYRPFQCSICKKSFARQHDKRRH-EQLH 622
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 504 PQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCS 397
P + M ++NG +K + Y+ +R CSQC+
Sbjct: 82 PNSTRQYMTLQNGKSRFCEKCQEYKCDRSHHCSQCN 117
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 220 LTAAVVQGDEPKGEFNAIGQSVRRGVRWGASLSGSTDTPVLGML 351
L+A++++ EPK + +G G ASL S P +L
Sbjct: 246 LSASLLESSEPKEKEEIVGSLEEEGTDESASLEDSLSHPTKSIL 289
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -1
Query: 651 PVEGFIPNEQXXXXXXXXXXXRSEANSTNVIACAFASPRISPTPEQ*PVPQTD 493
PV PN ++ STN++ CA SP P + PVP D
Sbjct: 324 PVNPITPNYSSIPLPAERNPKTPQSFSTNIVQCASPSP--LPLSFRSPVPNKD 374
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -1
Query: 420 PFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVKFALWLIT 241
P C C+A F+ ++H+K H + R P + D LA+++ +T
Sbjct: 207 PRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLF---DYLAEKISIGFTCLT 263
Query: 240 LN 235
N
Sbjct: 264 CN 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,588
Number of Sequences: 5004
Number of extensions: 46175
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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