Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1359
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 33 0.21
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 31 0.63
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 30 1.5
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 30 1.9
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 29 3.4
02_04_0048 + 19230738-19230812,19230998-19231123,19231239-192315... 29 3.4
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 28 7.8
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 28 7.8
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 7.8
05_05_0022 + 21592403-21593083,21593720-21594208 28 7.8
04_04_0157 + 23165638-23166633 28 7.8
04_01_0354 - 4646826-4647314 28 7.8
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -1
Query: 417 FSCSQ--CSARFTLRSNMERHVKQQHPQHWSVRRPAQ 313
F+CS C +F++++NM+RHVK+ H + + Q
Sbjct: 117 FTCSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQ 153
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 423 RPFSCSQCSARFTLRSNMERHVKQQH 346
R +SC+ C FT R +ERHV+++H
Sbjct: 495 RGYSCAVCMDSFTNRRVLERHVQEKH 520
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = -1
Query: 417 FSCSQ--CSARFTLRSNMERHVKQQH 346
F+C C+ +FT++ N++RHV++ H
Sbjct: 316 FACPMEGCNRKFTIKGNIQRHVQEMH 341
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 405 QCSARFTLRSNMERHVKQQH 346
+C+ RFT S + H+KQQH
Sbjct: 140 ECARRFTQESKLRAHIKQQH 159
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQCSARFTLRSNMERHVK 355
K +R++ R ++CS+CS + + S+ + H+K
Sbjct: 131 KHFRRKHSGHRQWACSRCSKAYAVHSDYKAHLK 163
>02_04_0048 +
19230738-19230812,19230998-19231123,19231239-19231505,
19231999-19232059,19232113-19232216
Length = 210
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -1
Query: 345 PQHWS-VRRPAQRGPP--PYTSTDALADRVKF-ALWLITLNDRCSQRDRRRDVTLMRSP 181
P +W V + P PY+S+ + + + F LW+ + D C R D LM +P
Sbjct: 78 PMYWDDVASTSSSSHPVAPYSSSSVIGENLLFHELWVCSFRDSCLWRAMSLDTFLMITP 136
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -1
Query: 453 KQKQRRYRTERPFSCSQCSARFTLRSNMERHVK 355
K +R++ R ++C++CS + + S+ + H+K
Sbjct: 132 KHFRRKHSGHRQWACARCSKAYAVHSDYKAHLK 164
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 411 CSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRG 307
C C A+FT +S+++ H+K Q ++R P+ G
Sbjct: 220 CRVCQAKFTCQSDLQSHLKVMKHQ-LNLRAPSSDG 253
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 567 NVIACAFASPRISPTPEQ*PVPQTDS 490
NV+A AFA SP P Q PV Q +S
Sbjct: 230 NVVAAAFAGGSSSPAPLQVPVFQQES 255
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/99 (27%), Positives = 38/99 (38%)
Frame = -1
Query: 417 FSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVKFALWLITL 238
F C C+ F +NM+ H+ W R ++GP T A A L ++ L
Sbjct: 211 FVCHVCNKAFNRYNNMQMHM-------WGHGREYRKGPESLKGTQATA-----TLAMLKL 258
Query: 237 NDRCSQRDRRRDVTLMRSPIMKKMRTTP**LTRKRMWKP 121
C R +V R+ +K RT RK KP
Sbjct: 259 PCYCCAAGCRNNVGHPRARPLKDFRTLQTHYKRKHGAKP 297
>04_04_0157 + 23165638-23166633
Length = 331
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 329 SVDPLKEAPHLTPLRTLWPIALNSPFGSSP*TTAAVREIAGAT 201
S P AP TP+ LW +A + P + P AAVR AT
Sbjct: 32 STTPATRAP-ATPVAVLWDLAASRPPSTLPLYDAAVRLHLAAT 73
>04_01_0354 - 4646826-4647314
Length = 162
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -1
Query: 381 RSNMERHVKQQHPQHWSVR-----RPAQRGPPPYTSTDA 280
R + H+ QQH + WS P QR PPP +S+ +
Sbjct: 7 REHGHGHLHQQHQRPWSCSFGFSWPPLQRSPPPSSSSSS 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,740
Number of Sequences: 37544
Number of extensions: 338208
Number of successful extensions: 964
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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