Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1359
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 3.7
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 28 4.9
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 28 4.9
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 28 6.5
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 28 6.5
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 27 8.6
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof... 27 8.6
At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containi... 27 8.6
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 28.7 bits (61), Expect = 3.7
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Frame = -1
Query: 546 ASPRISPTPEQ*PVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNME 367
AS ++ P P + + + + +++RR R +R + + R M+
Sbjct: 101 ASKQVGRRERAKPDPSKHHHRSHLPHSKKIETEEERRLRKKRELEKQRQDEKH--RQQMK 158
Query: 366 RHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVKF-ALWLITLNDRCSQRDRRRDVTLM 190
K Q P+ + ++ P P +TD + +R+K ++ L R D + LM
Sbjct: 159 NSHKSQMPKGHT----EEKKPTPLLTTDRVENRLKKPTTFICKLKFRNELPDPSAQLKLM 214
Query: 189 RSPIMKKMRTTP**LTRKRMWKPNPKNILQPDKQLP 82
K T + +++WK PK ++PD +P
Sbjct: 215 TIKRDKDQFTKYTITSLEKLWK--PKIFVEPDLGIP 248
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 303 PPYTSTDALADRVKFALWLITLNDRCSQRDRRRDVTL 193
P D L DRV A+WL LN R + ++ + +L
Sbjct: 385 PELNPDDTLVDRVLDAMWLYALNYRLADDEKLDETSL 421
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -1
Query: 441 RRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVK 262
R R R + C CS +F+ + H+ Q+H + +P+ P T T ++
Sbjct: 222 RENRKWRFWMCRTCSKKFSSPEECKNHLGQEHAAEF---KPSSTKDMPQTVTKVWGHKIS 278
Query: 261 FALW 250
W
Sbjct: 279 VGGW 282
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 465 VLMPKQKQRRYRTERPFSCSQC-SARFTLRSNMERHVKQQHPQHW 334
+L K +R ++ F+CS+C + +F++ ++++ H K W
Sbjct: 317 ILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKW 361
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 465 VLMPKQKQRRYRTERPFSCSQC-SARFTLRSNMERHVKQQHPQHW 334
+L K +R ++ F+CS+C + +F++ ++++ H K W
Sbjct: 317 ILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKW 361
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -1
Query: 450 QKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQH 346
++Q+ ++ F C C+ FT ++ H K +H
Sbjct: 249 KQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKH 283
>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 629
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 411 CSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRV 265
C CS +F+ R H++Q+H + P+QR P ++ AD+V
Sbjct: 216 CRTCSKKFSTRQACHDHLEQEHA---TGLIPSQRMHMPQRISEDWADKV 261
>At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 486
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -1
Query: 222 QRDRRRDVTLMRSPIMKKMRTTP**LTRKRMWK 124
+R R RDV ++R ++ +++P +T+KR+WK
Sbjct: 22 RRFRHRDVGIVRC-VLAASKSSPGSVTKKRLWK 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,240
Number of Sequences: 28952
Number of extensions: 256822
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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