Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT t...    60   4e-08
UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Hom...    60   7e-08
UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    48   2e-04
UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3; ...    46   9e-04
UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-...    45   0.002
UniRef50_Q22AT3 Cluster: Viral A-type inclusion protein repeat c...    36   1.2  
UniRef50_Q6E7J4 Cluster: JamP; n=4; Cyanobacteria|Rep: JamP - Ly...    33   6.5  
UniRef50_Q5SZX1 Cluster: Smg-5 homolog, nonsense mediated mRNA d...    33   8.6  
UniRef50_Q9UPR3 Cluster: Protein SMG5; n=19; Amniota|Rep: Protei...    33   8.6  

>UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 1 isoform a; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 1 isoform a - Tribolium
           castaneum
          Length = 2347

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 26/52 (50%), Positives = 41/52 (78%)
 Frame = +2

Query: 254 DLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLT 409
           +LDSL+ +LS I YLV +L KKN+KQ   EL+++V+++GLEA+  +L+CL +
Sbjct: 2   NLDSLSFTLSQISYLVASLTKKNYKQVVAELSKLVTLHGLEADRHLLQCLFS 53


>UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Homo
           sapiens (Human)
          Length = 2371

 Score = 59.7 bits (138), Expect = 7e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = +2

Query: 254 DLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWD 433
           +LDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + + 
Sbjct: 2   NLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDFS 58

Query: 434 GDRTTS 451
           GD  +S
Sbjct: 59  GDGKSS 64


>UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 2363

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +2

Query: 257 LDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTE 412
           +D+L+LSL  I + V  L+KKNFK T  E+++++  +G EAE    R L ++
Sbjct: 5   VDALSLSLKQISFAVTELSKKNFKSTVAEIHELIEKHGFEAECHFFRVLFSQ 56


>UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3;
           Dictyostelium discoideum|Rep: CCR4-Not complex
           component, Not1 - Dictyostelium discoideum AX4
          Length = 2526

 Score = 46.0 bits (104), Expect = 9e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 281 SHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWDGDRTTSAAT 460
           + I  L+ NL KK++K  S EL+QI++ YG +AE  + RCL+        +   TTS  T
Sbjct: 98  TQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVDSIDFKNTNTPITTSPTT 157

Query: 461 NS 466
            S
Sbjct: 158 TS 159


>UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 301

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/43 (44%), Positives = 31/43 (72%)
 Frame = +2

Query: 281 SHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLT 409
           +HI  LV ++NK+NF ++S+++NQ V  +GLEA+   LR L +
Sbjct: 12  THIRNLVKHVNKRNFNESSEQINQFVKEHGLEADRSSLRHLFS 54


>UniRef50_Q22AT3 Cluster: Viral A-type inclusion protein repeat
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: Viral A-type inclusion protein repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 3812

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 185  ENHKKSRKLQTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSV 364
            E  KKSRK Q+ L++S+    N + + L   L  +H    N+N KN++ T Q L+Q++  
Sbjct: 1836 EKVKKSRKEQSNLQVSYNEVLN-EKNILLQKLEELHQQS-NINLKNYEVTKQSLDQVIQE 1893

Query: 365  -YGLEAENQVLR 397
               LE  NQ ++
Sbjct: 1894 RQQLENANQTMQ 1905


>UniRef50_Q6E7J4 Cluster: JamP; n=4; Cyanobacteria|Rep: JamP -
           Lyngbya majuscula
          Length = 1808

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 583 ALIVLLQSVLDDQQPGKQLLI*LDDEQACQLLSKKGGVDAISSCRSCTVSVPS 425
           AL+     ++  Q PG  L + L +EQ   LL  +  + AI+    C VS P+
Sbjct: 650 ALVAKRGQLMQQQPPGAMLAVSLSEEQCQNLLDNQLSLAAINGLSQCVVSGPT 702


>UniRef50_Q5SZX1 Cluster: Smg-5 homolog, nonsense mediated mRNA
           decay factor; n=4; Euteleostomi|Rep: Smg-5 homolog,
           nonsense mediated mRNA decay factor - Homo sapiens
           (Human)
          Length = 374

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>UniRef50_Q9UPR3 Cluster: Protein SMG5; n=19; Amniota|Rep: Protein
           SMG5 - Homo sapiens (Human)
          Length = 1016

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,453,081
Number of Sequences: 1657284
Number of extensions: 11184800
Number of successful extensions: 27453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27445
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)