Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           24   1.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.4  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 502 LAHHPAKSTVVCRAVDHPTRSVTKLLKP 585
           + H P +S +V  ++  PT++V +  +P
Sbjct: 22  IQHSPQQSIIVSGSITQPTKTVIQSKRP 49


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 570 CYRACWMINSPAN 532
           CY A W  N P N
Sbjct: 25  CYYASWGANRPGN 37


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 YDLDSLTLSLSHIHYLVVNLNKKNFKQT 334
           +D+D      +++ Y+ +NL  K  K++
Sbjct: 104 WDVDKWRTLFTNLQYIDINLQNKGKKES 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,928
Number of Sequences: 336
Number of extensions: 3042
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)