Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    28   1.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.3  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   7.7  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   7.7  

>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 166 RTQVRRRKS*KIEKASNVFEAFVFALMEL*PGLFNVELIAYTLSRRKFKQEKFQAD 333
           R   R+R+   IE  S+ FEA   +L+++   L   E+ A+T S   FK+ K++ D
Sbjct: 46  RRWARQRRMETIEGHSSGFEALK-SLLKVCLKLGVKEVSAFTFSIENFKRSKYEVD 100


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 514 DDEQACQLLSKKGGVDAISSCRSCTVSVPSYPCRFSEKTS 395
           +D +A    SKK  VD +SS R C V   +  C F E  S
Sbjct: 456 NDPKATLGFSKKHSVD-LSSLRMCMVDCLNVDCEFQEIVS 494


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 677 LNTFSRANEKATSSAVVNFNSLDSRFNSAFVGFNSFVTERVG*STARQTTVD 522
           ++   +  E    S    FNS+D RFNS    F+S + +R+     +  T+D
Sbjct: 172 IDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDS-MEQRLDSMDQKMETID 222


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 677 LNTFSRANEKATSSAVVNFNSLDSRFNSAFVGFNSFVTERVG*STARQTTVD 522
           ++   +  E    S    FNS+D RFNS    F+S + +R+     +  T+D
Sbjct: 172 IDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDS-MEQRLDSMDQKMETID 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,124
Number of Sequences: 5004
Number of extensions: 50851
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)