Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1181 + 9410310-9411329                                           30   1.5  
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    30   2.0  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     28   6.0  
01_04_0110 - 16118497-16118637,16119868-16120008,16121154-161212...    28   6.0  

>01_01_1181 + 9410310-9411329
          Length = 339

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/75 (25%), Positives = 43/75 (57%)
 Frame = +2

Query: 164 KEHKFVVENHKKSRKLQTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFKQTSQE 343
           +++K+V + +    ++ TCLKL      + D+   TLS  H ++  VN+ ++  +   ++
Sbjct: 89  QDYKYVEQYNSVLHRIVTCLKLCGEKITDADMIDKTLSTFHANH--VNIQRQYRQDKYEK 146

Query: 344 LNQIVSVYGLEAENQ 388
            +++VSV  +EA+ +
Sbjct: 147 YSKLVSVL-MEAQGE 160


>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 61  IAEWGDNNYVVFIKVNNKIGDVGLRFIIISSENYQRTQVRRRKS*KIEK 207
           I  W D+N +VF     K G  G   II +  NY+   V  R+   +EK
Sbjct: 73  IGSWEDSNSIVFSTSTGKSGAHGNDDIIATLSNYESQLVAPREMAGVEK 121


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 305 LRRDNVYAISSTLKSPGHSSINAKTKASNTFEAFSIF 195
           +R DN+   S+T ++  H S +   K+  TFEAF  F
Sbjct: 506 MRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGF 542


>01_04_0110 -
           16118497-16118637,16119868-16120008,16121154-16121256,
           16122541-16122605
          Length = 149

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 308 LNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARI 424
           L KKN+    QE N I S   + AEN    CL TE  R+
Sbjct: 72  LKKKNYAIKLQEFNSICSTCHMRAEN---ACLGTEIQRL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,056
Number of Sequences: 37544
Number of extensions: 289715
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)