Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein pr...    60   1e-08
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ...    60   1e-08
BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    33   1.3  
AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protei...    33   1.3  
AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B pr...    33   1.3  
AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    33   1.3  
AL589685-1|CAI14159.1|  374|Homo sapiens Smg-5 homolog, nonsense...    33   1.3  
AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    33   1.3  
AL135927-5|CAI15524.1|  374|Homo sapiens Smg-5 homolog, nonsense...    33   1.3  
AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.                33   1.3  
AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.     33   1.3  
AJ311393-1|CAC85427.1|  132|Homo sapiens Neuropeptide G-Protein-...    32   1.7  
AF119815-1|AAD22047.1|  522|Homo sapiens G-protein-coupled recep...    30   6.7  

>BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein
           protein.
          Length = 2150

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = +2

Query: 254 DLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWD 433
           +LDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + + 
Sbjct: 2   NLDSLSLALSQISYLVGNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDFS 58

Query: 434 GDRTTS 451
           GD  +S
Sbjct: 59  GDGKSS 64


>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
           complex, subunit 1 protein.
          Length = 1551

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = +2

Query: 254 DLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWD 433
           +LDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + + 
Sbjct: 2   NLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDFS 58

Query: 434 GDRTTS 451
           GD  +S
Sbjct: 59  GDGKSS 64


>BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protein
           protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B
           protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AL589685-1|CAI14159.1|  374|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AL135927-5|CAI15524.1|  374|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.
          Length = 1016

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 41  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 99


>AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.
          Length = 1033

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 KTTKEHKFVVENHKKSRKL-QTCLKLSFLH*WNYDLDSLTLSLSHIHYLVVNLNKKNFK 328
           KT  +  F  EN     KL + C+KL FLH  +Y   +  L    ++Y V+ L K N K
Sbjct: 58  KTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKK 116


>AJ311393-1|CAC85427.1|  132|Homo sapiens Neuropeptide
           G-Protein-Coupled Receptor short form protein.
          Length = 132

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 519 SWMMSKPANCCPRREAWMLLVAAEVVRSPSQAI 421
           SW  S+   CC RR  W+L+ AA+  R    AI
Sbjct: 71  SWSRSRDRTCCCRRAWWILVPAADRARRERMAI 103


>AF119815-1|AAD22047.1|  522|Homo sapiens G-protein-coupled receptor
           protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 519 SWMMSKPANCCPRREAWMLLVAAEVVR 439
           SW  S+   CC RR  W+L+ AA+  R
Sbjct: 71  SWSRSRDRTCCCRRAWWILVPAADRAR 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,834,374
Number of Sequences: 237096
Number of extensions: 1605849
Number of successful extensions: 3015
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3015
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)