Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1358
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    29   2.2  
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    29   3.8  
At2g01930.2 68415.m00128 expressed protein                             27   8.8  
At2g01930.1 68415.m00127 expressed protein                             27   8.8  

>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 350 DSILDSSA*NFSCLNLRRDNVYAISSTLKSPGHSSINAKTKASNTFEAFSIFYDFLRRTC 171
           DS+  +    +S  N ++ ++ AIS  LK P H S++A    ++   +FS    F+   C
Sbjct: 697 DSLSAARCRIYSRSNTKKIDLEAISHRLKGPSHHSLSAIENLNSFKASFSFRAPFMSVFC 756

Query: 170 VL 165
            L
Sbjct: 757 FL 758


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to TGF-beta resistance-associated  protein TRAG
           (GI:15624071) {Mus musculus};  similar to
           beta-transducin repeats containing protein - Homo
           sapiens,PID:e1284220; 3' EST no_NP:TC8031
          Length = 1446

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 152 QKTTKEHKFVVENHKKSRKLQTCLKLSFLH*WNYDLDSLTLSLSHI 289
           QKT   H  VV   K   +      LSFLH W  D +   + ++H+
Sbjct: 817 QKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAHL 862


>At2g01930.2 68415.m00128 expressed protein
          Length = 283

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 323 NFSCLNLRRDNVYAISSTLKSPGHSSINAKTKASNTFE 210
           N+S +N  +DN +     + +P +S++ ++T  SN+ +
Sbjct: 63  NYSWINQPKDNKFFNMLPISTPSYSNVLSETSGSNSIQ 100


>At2g01930.1 68415.m00127 expressed protein
          Length = 283

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 323 NFSCLNLRRDNVYAISSTLKSPGHSSINAKTKASNTFE 210
           N+S +N  +DN +     + +P +S++ ++T  SN+ +
Sbjct: 63  NYSWINQPKDNKFFNMLPISTPSYSNVLSETSGSNSIQ 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,597
Number of Sequences: 28952
Number of extensions: 249615
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)