Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1357
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.59 
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    30   1.8  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    30   1.8  
Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          28   5.5  
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z68882-11|CAA93104.1|  520|Caenorhabditis elegans Hypothetical p...    27   9.6  
AB040993-1|BAB21561.1|  520|Caenorhabditis elegans CeCRMP/DHP-2 ...    27   9.6  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 586 RVGHGSGMHNRSGVHNGRGVHKGTCG*VRG 497
           R GHG   H+R G H G G H    G  RG
Sbjct: 271 RHGHGGSGHHRGGRHGGHGRHGSCSGSPRG 300



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 586 RVGHGSGMHNRSGVHNGRGVHKGTCG 509
           R GHG   H+R G H G G H    G
Sbjct: 320 RHGHGGSGHHRGGRHGGHGRHGSRSG 345


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 449
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 450 HKEPLAHVAK 479
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 449
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 450 HKEPLAHVAK 479
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 449
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 450 HKEPLAHVAK 479
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 449
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 450 HKEPLAHVAK 479
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 428
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 429 NGFNAVVHKEPLAHVAKVAKIAAPL 503
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 428
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 429 NGFNAVVHKEPLAHVAKVAKIAAPL 503
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 428
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 429 NGFNAVVHKEPLAHVAKVAKIAAPL 503
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


>Z68882-11|CAA93104.1|  520|Caenorhabditis elegans Hypothetical
           protein C47E12.8 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 613 KTLMMVDWSRVGHG-SGMHNRSGVHNGRGVHKGTCG*VRGAAILATLA 473
           K+L   D++++ +G +G+ +R  V   +GVH G    +R  A+ +T+A
Sbjct: 328 KSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGIIDPMRFVAVTSTMA 375


>AB040993-1|BAB21561.1|  520|Caenorhabditis elegans CeCRMP/DHP-2
           protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 613 KTLMMVDWSRVGHG-SGMHNRSGVHNGRGVHKGTCG*VRGAAILATLA 473
           K+L   D++++ +G +G+ +R  V   +GVH G    +R  A+ +T+A
Sbjct: 328 KSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGIIDPMRFVAVTSTMA 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,349
Number of Sequences: 27780
Number of extensions: 178687
Number of successful extensions: 651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)