Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1355
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 4e-45
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 4e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 4e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 40 5e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.41
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.41
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.55
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 2.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (427), Expect = 4e-45
Identities = 79/85 (92%), Positives = 81/85 (95%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+F
Sbjct: 65 LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN PA YVAIQAVLSLYASGRTT
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTT 149
Score = 129 bits (311), Expect = 5e-31
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 95.1 bits (226), Expect = 1e-20
Identities = 49/71 (69%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALV-HYHRQREIV 686
GIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDL + +REIV
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIV 209
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 210 RDIKEKLCYVA 220
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 259 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 438
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 439 TFNTPAMYVAIQAVLSLYAS 498
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-----QTTS*RSSPSAALVH 662
RS G V+DSGDGV+H +P+ EGY + +I + LAGRD+ R+ P ++L
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKT 236
Query: 663 YHRQREIVRDIKEKLCYV 716
R IKE+ CYV
Sbjct: 237 AER-------IKEECCYV 247
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 235
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (240), Expect = 2e-22
Identities = 42/82 (51%), Positives = 62/82 (75%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MF
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASG 501
E + +YVAIQAVLSLYA G
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQG 146
Score = 62.5 bits (145), Expect = 6e-11
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALVHYHRQR--EI 683
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T S ++R E
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD-ATRYLISLLLRKGYAFNRTADFET 208
Query: 684 VRDIKEKLCYVA 719
VR++KEKLCYV+
Sbjct: 209 VREMKEKLCYVS 220
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 247
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 248 R 250
R
Sbjct: 62 R 62
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 4e-21
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIM 432
L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ +
Sbjct: 69 LKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128
Query: 433 FETFNTPAMYVAIQAVLSLYASGRTT 510
+ET N PA+ ++Q VL+LYAS RTT
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTT 154
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Score = 68.1 bits (159), Expect = 1e-12
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 471 PSRALAVRVRSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-QTTS*RSSPS 647
P AL R+ GIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+ + S
Sbjct: 143 PVLALYASARTT-GIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKS 201
Query: 648 AALVHYHRQREIVRDIKEKLCYVAS 722
+ ++EIVR+IKEK CYVAS
Sbjct: 202 GHELVSSAEKEIVREIKEKCCYVAS 226
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
E+ PA Y+A Q + +ASG+ T
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGT 147
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 172
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 3e-11
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 450
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 451 PAMYVAIQAVLSLYASGRTTVS 516
P++ I + S Y + + + S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 181
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 501 SYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 608
S GIVL+ G+ SH +P+ G + R+ G
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/77 (29%), Positives = 45/77 (58%)
Frame = +1
Query: 280 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 459
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 460 YVAIQAVLSLYASGRTT 510
Y+ QAV +A+ ++T
Sbjct: 134 YLTKQAVCVAFANSKST 150
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 438
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 439 TFNTPAMYVAIQAVLSLYASG 501
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 507 HGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 611
HG+V+D G + PI +G + A +L L GR
Sbjct: 195 HGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3
Query: 513 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALVHYHRQREIVRD 692
+V+DSG +H +P+ + A+ R+D+ G+ L T + S + + IV +
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK-LLTNYLKEVISYRKYNMMEETYIVNE 217
Query: 693 IKEKLCYVA 719
IKE +CYV+
Sbjct: 218 IKESVCYVS 226
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 331 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 474
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 131 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 228 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 67
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 269 YLRVRYLFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 150
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -1
Query: 262 GSGTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 89
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 2.9
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
Frame = +1
Query: 331 FYNE--LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY--VAIQAVLSLYAS 498
FY+E L++ E + ANR K TP+ VA+ + S+ ++
Sbjct: 453 FYDEPLLKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSA 512
Query: 499 GRTTVSCWTPATVSP-TPCPSTKDTHSPTPSCVWT*PVATSRLPHEDPHRARLSFTTTAS 675
R A SP TP P K+T +P+ S P ATS P R+ +
Sbjct: 513 SR--------AMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLN 564
Query: 676 GKS 684
S
Sbjct: 565 SAS 567
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 231 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 115
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/77 (25%), Positives = 29/77 (37%)
Frame = +1
Query: 409 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPS 588
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAPL 183
Query: 589 CVWT*PVATSRLPHEDP 639
+ R H P
Sbjct: 184 STMQTALMRLRTYHPSP 200
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 373 LLTEAPLNPKANREKMTQIMFETFN 447
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/86 (23%), Positives = 32/86 (37%)
Frame = +1
Query: 412 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSC 591
E M +M ET TP ++ + + TP V T P+ + +P
Sbjct: 131 EAMITLMEETMTTPMEETTTILPMAAMTTPMEETTTTTPM-VETTTIPTVETMTTPMVEA 189
Query: 592 VWT*PVATSRLPHEDPHRARLSFTTT 669
+ P+A P E+ + TTT
Sbjct: 190 MTILPMAAMTTPMEETTTTPMEETTT 215
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDT 570
TT S TPA V P P PST T
Sbjct: 838 TTSSHITPADVHPLPPPSTSTT 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,253
Number of Sequences: 5004
Number of extensions: 77125
Number of successful extensions: 283
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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