Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1355
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 4e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 4e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 185 4e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 185 4e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 4e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 7e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 102 3e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 93 2e-19
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 85 8e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 6e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 3e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 54 1e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 5e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.58
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.77
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 31 1.4
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_29052| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.8
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 30 2.4
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 2.4
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 2.4
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.4
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 3.1
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 3.1
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08) 29 4.1
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 29 4.1
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2) 29 4.1
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 5.5
SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 7.2
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032) 28 7.2
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 28 7.2
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 28 9.5
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 9.5
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 28 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 185 bits (450), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTT 150
Score = 132 bits (320), Expect = 2e-31
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
Score = 93.9 bits (223), Expect = 1e-19
Identities = 48/71 (67%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
GIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDL + + +REIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 211 RDIKEKLCYVA 221
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 185 bits (450), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTT 149
Score = 130 bits (313), Expect = 2e-30
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 91.1 bits (216), Expect = 9e-19
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDL + + +REIV
Sbjct: 150 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 209
Query: 687 RDIKEKLCYVA 719
RDIKEKL YVA
Sbjct: 210 RDIKEKLAYVA 220
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 185 bits (450), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTT 149
Score = 131 bits (316), Expect = 7e-31
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 94.7 bits (225), Expect = 7e-20
Identities = 49/71 (69%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDL + + +REIV
Sbjct: 150 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 209
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 210 RDIKEKLCYVA 220
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 185 bits (450), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTT 150
Score = 137 bits (331), Expect = 1e-32
Identities = 62/64 (96%), Positives = 64/64 (100%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
Score = 94.7 bits (225), Expect = 7e-20
Identities = 49/71 (69%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDL + + +REIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 211 RDIKEKLCYVA 221
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 185 bits (450), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
ETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTT 150
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 63/64 (98%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 SKRG 253
SKRG
Sbjct: 61 SKRG 64
Score = 48.8 bits (111), Expect = 5e-06
Identities = 35/70 (50%), Positives = 38/70 (54%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALVHYHRQREIVR 689
GIV+DSGDGVSHTVPIYE G TT+ +REIVR
Sbjct: 151 GIVMDSGDGVSHTVPIYEE------------RGYSFTTTA--------------EREIVR 184
Query: 690 DIKEKLCYVA 719
DIKEKLCYVA
Sbjct: 185 DIKEKLCYVA 194
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 131 bits (316), Expect = 7e-31
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 93.9 bits (223), Expect = 1e-19
Identities = 48/71 (67%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
GIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDL + + +REIV
Sbjct: 113 GIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 172
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 173 RDIKEKLCYVA 183
Score = 61.7 bits (143), Expect = 6e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = +1
Query: 406 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 510
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTT
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTT 112
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTF 333
LTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 102 bits (245), Expect = 3e-22
Identities = 46/66 (69%), Positives = 56/66 (84%)
Frame = +1
Query: 313 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 492
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 493 ASGRTT 510
ASGRTT
Sbjct: 2189 ASGRTT 2194
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
G V D GDGVSHTVP+Y+GY LPHA R+DLAGRDL R + +++I+
Sbjct: 2195 GTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQII 2254
Query: 687 RDIKEKLCYVA 719
RD+KE LCY A
Sbjct: 2255 RDLKETLCYCA 2265
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 187
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 102 bits (244), Expect = 4e-22
Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Frame = +1
Query: 244 QKRY-LTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 417
Q RY L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 418 MTQIMFETFNTPAMYVAIQAVLSLYASGRTT 510
M ++MFE + +Y+AIQAVL+LYA G T
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLT 153
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALVHYH-RQREIV 686
G+V+DSGDGV+H P+YEG+ALPH RLD+AGRD+ + H E V
Sbjct: 154 GVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETV 213
Query: 687 RDIKEKLCYV 716
R +KEKLCYV
Sbjct: 214 RMMKEKLCYV 223
Score = 51.2 bits (117), Expect = 9e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 80 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 250
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/71 (67%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*R-SSPSAALVHYHRQREIV 686
G+V DSGDGVSH VPIYEGYALPHAILRLDLAGRDL + + +REIV
Sbjct: 29 GVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFTTTAEREIV 88
Query: 687 RDIKEKLCYVA 719
RDIKEKLCYVA
Sbjct: 89 RDIKEKLCYVA 99
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 427 IMFETFNTPAMYVAIQAVLSLYASGRTT 510
IMFE FN+PA+YVAIQAVLSLYASGRTT
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTT 28
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 84.6 bits (200), Expect = 8e-17
Identities = 35/50 (70%), Positives = 45/50 (90%)
Frame = +1
Query: 361 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 510
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTT
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTT 175
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-QTTS*RSSPSAALVHYHRQREIV 686
G+VLD+GDGVSH+VPIYEG+A+PH+I+R D+AGRD+ + H + EIV
Sbjct: 176 GVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIV 235
Query: 687 RDIKEK 704
R IKE+
Sbjct: 236 RTIKEE 241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.7 bits (168), Expect = 6e-13
Identities = 29/79 (36%), Positives = 52/79 (65%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 450
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 451 PAMYVAIQAVLSLYASGRT 507
PA ++ +VL+ +A+GR+
Sbjct: 63 PAFFLCKNSVLTAFANGRS 81
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 507 HGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 608
+G+V+DSG + VP+++GY L AI+R LAG
Sbjct: 82 NGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAG 115
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 3e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 187
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 226
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 227 GDEAQSKRG 253
GD A +K G
Sbjct: 753 GDAAVAKSG 761
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLQTTS*RSSPSAALVHYHRQR---E 680
G+ L SG + IYEG+ L H + L++ G L T + + H +
Sbjct: 780 GVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHL-TENLKQYLRDQRGHNFTSSSGWQ 838
Query: 681 IVRDIKEKLCYVA 719
IV DIKEK+CY++
Sbjct: 839 IVNDIKEKICYLS 851
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 48.8 bits (111), Expect = 5e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 617
R+ G V+DSGDGV+H +P+ EGY + I + +AGRD+
Sbjct: 59 RTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDI 98
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 241 EQKRYLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 378
++ Y T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 292 DKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 31.5 bits (68), Expect = 0.77
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPI 557
R+ G V+DSGDGV+H +P+
Sbjct: 353 RTLTGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 184 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 68
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 0.58
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 187 GRDGRYGTEGLLCRR*-GTEQKRYLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 357
GR G + GL G+ + L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 358 EEHPVLLTEAPLNPKANRE 414
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSRLPHEDPHRARLSFTT 666
TT + T T +PT +T +T + TP+ T P AT+ P+ + TT
Sbjct: 169 TTTTTPTATTTTPTATTTTPNTTTNTPNATTTTPTATTTTPNATTTTPNTTTTT 222
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 241 EQKRYLTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 342
E K Y L Y P + G + NWD ++IW +TF E
Sbjct: 280 ECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFAGDDAPRAV 154
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -3
Query: 365 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMG--YLRVRYLFCSVPHLLHKSPSVPYRPS 192
CS + + C + ++V CS Y+ V + CS + H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 191 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 99
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 613 SRPAKSRRRMAWGSAYPS*MGTVWETPSPESSTIPW 506
S P + +W S P T W +PSP+ T W
Sbjct: 103 SLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSW 138
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 619 WRSRPAKSRRRMAWGSAYPS*MGTVWETPSPESSTIPW 506
W S P+ + +W P T W +PSP+ T W
Sbjct: 90 WTS-PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSW 126
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -1
Query: 631 HEVVWRSRPAKSRRRMAWGSAYPS*MGTVWETPSPESSTIPW 506
++ + S + +W S P T W +PSP+ T W
Sbjct: 61 YKTTFMSSTFPQHKTTSWTSPSPQYKTTSWTSPSPQYKTTSW 102
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -1
Query: 619 WRSRPAKSRRRMAWGSAYPS*MGTVWETPSPESSTIPW 506
W S P+ + +W S P T W P P+ T W
Sbjct: 78 WTS-PSPQYKTTSWTSPSPQYKTTSWSLPLPQHKTTSW 114
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 387 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 479
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_29052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 542 PHRAHLRRIRTPPRHPASGLSRSRPPDYLMKILTERGSRSL 664
P H + PPR P+S + PPD + + + GSR L
Sbjct: 134 PDETHAAGLSVPPRAPSSAPIHATPPDSPVYVDPKLGSRKL 174
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 216 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 411 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 469 IQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVAT 615
+ VLS++ G T+ +P +PTP P K T +PTPS T P T
Sbjct: 203 VSIVLSMF-DGNMTIFGLSPD--APTPPPPVKTTAAPTPSPPQTPPPPT 248
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 439 TFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPS 588
T TP++ + QA S+ S T S + V+P+ ST+ S TPS
Sbjct: 1840 THLTPSVASSTQAASSVILSAEVTTSVTSSTQVTPSVASSTQAATSVTPS 1889
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 379 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPS 558
T+ + ++ + T + T P++ + Q S+ +S + T S + +P+ PS
Sbjct: 1870 TQVTPSVASSTQAATSVTPSTQGMPSVAPSTQMTPSVASSTQVTPSVASSTQAAPSVTPS 1929
Query: 559 TKDTHSPTPS 588
T T S TPS
Sbjct: 1930 TLMTPSVTPS 1939
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 274 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 252 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 128 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 279 FDGVFEGQVPLLLCASSPT*ESFCPIPTITP*WRGLPT 166
+DGV + ++ LLL +SSP S PI TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 241 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 107
+C ++LSH + H M D +HG RS SCET L T
Sbjct: 176 ICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 346 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWT 525
++A + +P + E N K + +K+ Q M +T + + ++ +A + W
Sbjct: 866 KIASKHNPEMTEEMRANLKEHLDKINQRMNDTMT---LLYNMPKIMRKFAF---ELPNWA 919
Query: 526 PATVSPTPCPSTKDTHSP-TPSCV 594
P PT P+ K T +P TPS V
Sbjct: 920 PKIPLPTEPPTEKMTEAPTTPSAV 943
>SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)
Length = 240
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDTHSPT 582
TT SC P T +PT P+ T +PT
Sbjct: 199 TTCSCVEPPTQAPTQAPTQAPTQAPT 224
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 431 CSKHSTRPPCTSPSKPCSRCTRPVVPRYRAG 523
C H+ R P T+PS PC Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
Length = 610
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/88 (28%), Positives = 38/88 (43%)
Frame = +1
Query: 439 TFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 618
T TP+ V++Q S R+T+S T++ P P + DT SPTP T T
Sbjct: 303 TEETPSRLVSLQN--SPVKMMRSTLSA---QTLAENPIPESTDTTSPTPPLTDTKSPRTP 357
Query: 619 RLPHEDPHRARLSFTTTASGKSFVTSRR 702
P P R + + + + +RR
Sbjct: 358 EKPAPLPTRPQTPIFSKTQKIADIAARR 385
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -1
Query: 247 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 83
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 82 GNFFVAHLE 56
G V L+
Sbjct: 521 GQVDVLLLD 529
>SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 488 CTRPVVPRYRAG-LRRRCLPHRAHLRRIRTPPRHPASGLSRSRPPDYLMKILTERGSRSL 664
C R + ++ G L + C + + R+P H A +++ ++ +K+ T G+
Sbjct: 47 CPRSLTTSWKTGVLFQDC--ENTNPQTSRSPSYHLAGFVTKDVQREFCIKVDTFNGANRP 104
Query: 665 PPPAGNRS*HQGEA 706
P P G +QGEA
Sbjct: 105 PWPVGQYCVYQGEA 118
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +1
Query: 328 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 507
T E VAPE + E ++P+ T + ET TP VA + ++ +
Sbjct: 4182 TMAPETTVAPET--TMAAETTVSPETTEASGTTVASETTTTPETTVAPETTMAPETTVAL 4239
Query: 508 TVSCWTPATVSPTPCPSTKDTHSP 579
+ TV+P + + T +P
Sbjct: 4240 ETTMAPETTVAPETTIAPESTEAP 4263
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 535 VSPTPCPSTKDTHSPTPSCVWT*PVATSRLP 627
VS TP + + H PTP C PV T P
Sbjct: 10 VSSTPSQMSAERHEPTPQCRLKFPVQTRHEP 40
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 535 VSPTPCPSTKDTHSPTPSCVWT*PVATSRLPHEDPHRAR 651
V+ TP P+T+ + P PSC+ P A+S+ P + PH R
Sbjct: 177 VAETP-PTTQANNDPVPSCM---PDASSQAP-QPPHEPR 210
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 159 GNTARGASSPAKPALHIPEPLSTT 88
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)
Length = 216
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 444 QHARHVRRHPSRALAVRVRSYHGIVLDSGDGVSHTVPIYEG 566
QH RHV S ++ S V D D + +P YEG
Sbjct: 25 QHERHVGHGKSEGERAQIDSLQKYVRDIFDHIDQIIPKYEG 65
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 439 TFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 618
T++ A Y+ I ++ + S +++S + +T+SPT S+ T SP+ S T ATS
Sbjct: 126 TYSVIANYIII--IIIIITSSSSSLSS-SSSTISPTKLSSSSSTISPSQSSSTT--AATS 180
Query: 619 RLPHEDPH 642
P H
Sbjct: 181 PPPPPSSH 188
>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
Length = 1709
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 446 TRPPCTSPSKPCSRCTRPVVPRYRAGLRRRCLPHRAHLRRIRTP 577
TR T +PCS TR V+P + R LP R + ++ P
Sbjct: 1531 TRLLATKDFQPCSAKTRRVIPSFTVWRVRGRLPLRFWINIVKNP 1574
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +2
Query: 440 HSTRPPCTSPSKPCSRCTRPVVPRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPP 619
H R S S+ R R PR R R HR+H R R+ R P SRSR P
Sbjct: 218 HHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRS--RSPRRRHSRSRSP 275
Query: 620 DY 625
+
Sbjct: 276 TH 277
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Frame = +2
Query: 440 HSTRPPCTSPSKPCS----RCTRPVVPRYRAGLRRRCLPH---RAHLRRIRTPPRHPASG 598
+S P SPS P R T P +P L + PH A R PP P
Sbjct: 582 YSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPP 641
Query: 599 LSRSRPPDYLMKILTERGSRSLPPP 673
+S PP L+ L + LPPP
Sbjct: 642 PRQSTPPPLLLIPLLPLLTLPLPPP 666
>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 618
+T+S +P T + P + +T P+PS T P AT+
Sbjct: 6 STLSAGSPVTAPSSTRPPSPNTRPPSPSTTATLPSATN 43
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 447 HARHVRRHPSRALAVRVRSYHGIVLDSGDGVSHTVPI 557
+ARH R PSR +R+ Y D DG++ ++ I
Sbjct: 42 NARHPRVEPSRCRGLRLLDYCSDKFDDDDGLTDSLDI 78
>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 637
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 455 PCTSPSKPCSRCTRPVVPRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPPDYLMK 634
P PS+ CS C R + +RA L C ++H+++ R LS S+ ++L K
Sbjct: 98 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKK-RLRDNLEDEILSDSQKVEFLPK 155
Query: 635 ILT 643
L+
Sbjct: 156 FLS 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,351,617
Number of Sequences: 59808
Number of extensions: 690904
Number of successful extensions: 2767
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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