Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1353
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    28   1.2  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    26   4.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   4.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   6.1  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.1  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +1

Query: 415 TSAPIDFSRLVHVT-YMYPN 471
           +SAP  FS+L+H+T ++YPN
Sbjct: 34  SSAPSTFSKLIHLTSFLYPN 53


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 157 LHNNCVVVRCQGCFVSVLVEY 219
           L NN  VV C GC +++ V+Y
Sbjct: 112 LENNRSVVPCMGCSLTIQVDY 132


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 558 NKNQTRKIIICVITGGRTSCESALVGTSTL 647
           N  QT++ +   +TGG  SC S L+ + T+
Sbjct: 306 NSLQTKEFVAKNLTGGHASCFSVLLKSDTV 335


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 212 LNTGLE*STLKYLGSIHHKWNWMGYVFASF 301
           LN G++ ++ K L  +   W WM +V ASF
Sbjct: 181 LNNGIKATSTKVLFGLLGLWWWMLFVTASF 210


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 190 GCFVSVLVEYWFRIKYFEI 246
           GCF++V V+ WF ++ + +
Sbjct: 9   GCFINVNVKLWFLVRVYRL 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,385
Number of Sequences: 5004
Number of extensions: 52128
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)