Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1353
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0803 + 6288702-6289121                                           30   2.1  
12_02_0348 - 17816851-17817387                                         29   2.8  
12_02_0345 - 17767704-17768240                                         29   2.8  
04_03_0537 + 16887793-16888176                                         29   4.8  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    28   8.5  

>07_01_0803 + 6288702-6289121
          Length = 139

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -1

Query: 275 NSIYGELSPNISKYFILNQYST 210
           NS++ +L+PN ++ FIL +YST
Sbjct: 40  NSLFAQLNPNFNENFILPKYST 61


>12_02_0348 - 17816851-17817387
          Length = 178

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 305 TKSLQKRIPSNSIYGELSPNISKYFILNQYST 210
           T+ +Q+ +  NS++ +L+PN S+ FIL + ST
Sbjct: 81  TRKIQQEV--NSLFAQLNPNFSENFILPKCST 110


>12_02_0345 - 17767704-17768240
          Length = 178

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 305 TKSLQKRIPSNSIYGELSPNISKYFILNQYST 210
           T+ +Q+ +  NS++ +L+PN S+ FIL + ST
Sbjct: 81  TRKIQQEV--NSLFAQLNPNFSENFILPKCST 110


>04_03_0537 + 16887793-16888176
          Length = 127

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 311 NTTKSLQKRIPSNSIYGELSPNISKYFILNQYST 210
           N  + +Q+ +  NS++ +L+PN S+ FIL + ST
Sbjct: 61  NRARKIQQEV--NSLFTQLNPNFSENFILPKCST 92


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 251 GSIHHKWNWMGYVF-ASFLWCSALFMFLMQMSKLSF 355
           G++HH WNW   +  ASFL    +  ++ + +K  F
Sbjct: 255 GNVHHGWNWQTILIGASFLAFLLVAKYIAKKNKKLF 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,817
Number of Sequences: 37544
Number of extensions: 280575
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)