Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1353
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      35   0.057
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             29   2.8  
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)                 29   3.7  
SB_7453| Best HMM Match : Microcin (HMM E-Value=2)                     29   4.9  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 275 WMGYVFASFLWCSALFMFLMQMSKLSF 355
           W  YV+  +LW S+ FMF+M++S LS+
Sbjct: 117 WNEYVYRDYLWQSSRFMFIMRLSILSY 143


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 320  RVLNT-TKSLQKRIPSNSIYGELSPNISKYFILNQYSTKT 204
            R+L T T SL   I +   YG++SP++   F  N Y   T
Sbjct: 1031 RLLFTDTDSLMYEIETRDFYGDISPDVKSMFDTNNYPKAT 1070


>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
          Length = 335

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 464 YMYVTCTRRLKSIGAEVIIELTFQVLVIALLPTR*LQMT-ILTSA 333
           Y+Y+TC RR+   G E ++    ++  ++L   R L  T I+T A
Sbjct: 254 YLYLTCCRRITDTGVEALVHSMAELQGLSLAKCRELTSTGIVTIA 298


>SB_7453| Best HMM Match : Microcin (HMM E-Value=2)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 320 RVLNT-TKSLQKRIPSNSIYGELSPNISKYFILNQY 216
           R+L T T SL   I +   YG++SP++   F  N Y
Sbjct: 43  RLLFTDTDSLMYEIETRDFYGDISPDVKSMFDTNNY 78


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 573  RKIIICVITGGRTSCESALVGTSTLPIAA*NNNASRLXGGGTVLT 707
            R  ++ + TGG T+   +  GT+T P++      S +   GT  T
Sbjct: 1532 RTTVVPISTGGTTTAPRSTDGTATAPMSTEGTRTSPMSTDGTTAT 1576


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,688
Number of Sequences: 59808
Number of extensions: 350126
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)