Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1352
(204 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 106 1e-22
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 74 5e-13
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 69 2e-11
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 4e-10
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 61 5e-09
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 60 9e-09
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 60 9e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 1e-08
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 58 4e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 5e-08
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 56 2e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 54 5e-07
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 50 1e-05
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 48 3e-05
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 48 5e-05
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 7e-05
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 47 7e-05
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 41 0.005
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 41 0.006
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 40 0.008
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 0.40
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 34 0.69
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 2.1
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 2.8
UniRef50_Q96XL2 Cluster: Putative uncharacterized protein ST2504... 31 4.9
UniRef50_Q7QB38 Cluster: ENSANGP00000012879; n=2; Culicidae|Rep:... 30 8.5
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 106 bits (254), Expect = 1e-22
Identities = 49/55 (89%), Positives = 53/55 (96%)
Frame = +1
Query: 40 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLT
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLT 62
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 74.1 bits (174), Expect = 5e-13
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELL 59
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 69.3 bits (162), Expect = 2e-11
Identities = 30/56 (53%), Positives = 41/56 (73%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREII 59
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 4e-10
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 198
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 60.9 bits (141), Expect = 5e-09
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = +1
Query: 46 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVML 60
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 60.1 bits (139), Expect = 9e-09
Identities = 23/53 (43%), Positives = 40/53 (75%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLI 62
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 60.1 bits (139), Expect = 9e-09
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 198
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ L K R +
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQELLTLDEKNPRRI 61
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 1e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 58.0 bits (134), Expect = 4e-08
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 5e-08
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 56.0 bits (129), Expect = 2e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 46 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 54.4 bits (125), Expect = 5e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 2e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 31 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 50.0 bits (114), Expect = 1e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLL 59
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 48.4 bits (110), Expect = 3e-05
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +1
Query: 49 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIIL 59
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 47.6 bits (108), Expect = 5e-05
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 64 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL+
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLS 62
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 47.2 bits (107), Expect = 7e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLL 59
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 41.1 bits (92), Expect = 0.005
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 145 VWRVKYTLARIRKAARELLT 204
VWRVK+TLA+IRKAARELLT
Sbjct: 1 VWRVKFTLAKIRKAARELLT 20
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 40.7 bits (91), Expect = 0.006
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 64 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLAR 174
P P++K RL E +++ EYGL+NKRE+W + T+AR
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIAR 46
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 49 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 0.40
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 153 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 49
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 33.9 bits (74), Expect = 0.69
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 142 EVWRVKYTLARIRKAARELL 201
EVWRVK+TL +IRKA ELL
Sbjct: 41 EVWRVKFTLTKIRKAFWELL 60
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 4 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 180
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 181 K 183
+
Sbjct: 335 R 335
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 2.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 85 ARLDQELKIIGEYGLRNKREVWRVKYTLA 171
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
>UniRef50_Q96XL2 Cluster: Putative uncharacterized protein ST2504;
n=1; Sulfolobus tokodaii|Rep: Putative uncharacterized
protein ST2504 - Sulfolobus tokodaii
Length = 509
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +1
Query: 25 NRVP-SVFSKTYVTPRR-PFEKAR--LDQELKIIGEYGLRNKREVWRVKYTLARIRK 183
N VP ++ ++ Y + P + AR L++ LK++ E G+ K + + + YTL R+ K
Sbjct: 22 NAVPLTIMAEEYAKEKNIPKQSARKVLEKRLKVLVEQGIVEKLKTYPISYTLKRLPK 78
>UniRef50_Q7QB38 Cluster: ENSANGP00000012879; n=2; Culicidae|Rep:
ENSANGP00000012879 - Anopheles gambiae str. PEST
Length = 1325
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 133 CGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTV-LCCSPSWR 8
C D +R L QD ++ D+ S T LK P V CCS WR
Sbjct: 882 CNDECIRSRQVLCQDHRGKESDQCS-TELKPPAVESCCSFKWR 923
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,135,905
Number of Sequences: 1657284
Number of extensions: 2725159
Number of successful extensions: 7971
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 7862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7971
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 9954893260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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