Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1352
(204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 89 6e-20
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 89 6e-20
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 1.4
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 1.8
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 24 2.4
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 24 2.4
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 24 3.2
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 23 4.2
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 23 5.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 23 7.3
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 22 9.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 22 9.7
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 22 9.7
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 22 9.7
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 22 9.7
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 89.4 bits (212), Expect = 6e-20
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLT
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLT 61
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 89.4 bits (212), Expect = 6e-20
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +1
Query: 34 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLT
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLT 61
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 7 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 165
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 158 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 51
LT H+ + + + +WS + F R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 10 AKMVNNRVPSVFSKTYVTPRRPFEK 84
A +++N +PSV SK + PR + K
Sbjct: 80 ASLLSNSLPSVKSKIFKVPRARYVK 104
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 7 LAKMV--NNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRN 135
LAKM+ ++++P+ T +KA +D+ L+ EYG+RN
Sbjct: 66 LAKMLEQHHKIPACLHLTCTN----VDKAIIDKALETAKEYGIRN 106
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 80 SKGRRGVTYVFENTDGTLLFTIL 12
SKG R +T + E+ GTL+ + L
Sbjct: 188 SKGFRNITVLGESAGGTLILSFL 210
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 164 VYLTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYVFENTDGTLLFT 18
VY+ + T+ + YS ++ N + F K VFE+ L F+
Sbjct: 466 VYIEKITNAACYQEYSAIVINGTALAIFKKDTEVARKVFESEISCLDFS 514
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 40 VFSKTYVTPRRPFEKARLDQELKIIGEY 123
VF+ T+V RP+ + L++ KI Y
Sbjct: 195 VFTGTFVVSMRPYPEKDLERIRKITSAY 222
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 79 QKDDEVSRTSLKIPTVLCC 23
QKD TS K+P CC
Sbjct: 1152 QKDLHDKLTSKKVPCTFCC 1170
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 135 VAETVLSDDLQLLVKTCLFKRTTRCHVR 52
V + SD++Q +VK R R HV+
Sbjct: 289 VTRLINSDEIQSIVKAAGPSRVKRAHVQ 316
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 151 RVKYTLARIRKAARELLT 204
R++YT R+R AR+ LT
Sbjct: 1566 RLEYTALRLRSYARKTLT 1583
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 135 VAETVLSDDLQLLVKTCLFKRTTRCHVR 52
V + SD++Q +VK R R HV+
Sbjct: 289 VTRLINSDEIQSIVKAAGPSRVKRAHVQ 316
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 158 LTRHTSRLLRRPYSPMIFNSW 96
+T+H + R+ S ++ NSW
Sbjct: 748 ITKHKKKAARKYVSELLSNSW 768
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 145 LHACCGDRTLR 113
++ACCGD +LR
Sbjct: 75 VYACCGDGSLR 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,416
Number of Sequences: 5004
Number of extensions: 11525
Number of successful extensions: 41
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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