Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1352
(204 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 83 4e-17
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 83 4e-17
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 81 9e-17
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 60 2e-10
07_03_1358 - 25984897-25984997,25985623-25985650 47 2e-06
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 1.6
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 2.1
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 27 2.8
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 26 3.6
03_04_0181 - 18192774-18192970,18193519-18193882 26 3.6
10_08_0989 + 22069244-22071679 26 4.8
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 26 4.8
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 26 4.8
11_06_0348 - 22561589-22563656,22563788-22564602 25 6.4
10_01_0251 + 2641320-2643272 25 8.4
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189... 25 8.4
07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742 25 8.4
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 25 8.4
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 82.6 bits (195), Expect = 4e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLT
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLT 63
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 82.6 bits (195), Expect = 4e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLT
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLT 279
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 81.4 bits (192), Expect = 9e-17
Identities = 36/52 (69%), Positives = 43/52 (82%)
Frame = +1
Query: 49 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLT
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLT 86
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 198
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ L K R +
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQELLTLDEKNPRRI 61
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 43 FSKTYVTPRRPFEKARLDQELKIIGEYG 126
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 154 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 26
R I+H C + T R LG D DE S S K LC
Sbjct: 265 REIIHCCADETTKRIIEELGDDYYAILADECSDLSYKEQLALC 307
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 76 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKA 186
FE A+ ++ KII E R+ ++ +KY LA A
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNA 430
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 109 SSTLGQDVPFQKDDEVSRTSLKIPTVLCCSPSWRA 5
S+ +D F++DD S + +PT LC S S A
Sbjct: 190 STEFKKDQSFRRDDNHSSQTRNMPTELCTSSSEEA 224
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 13 KMVNNRVPSVFS----KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 180
K+ NN +P + K + ++ E LD L + G +R++RE RV YT
Sbjct: 343 KLKNNYLPEMEKIHKKKERLLKKQQREALLLDNRLTVNGFTSVRSRRERKRVTYTFDDYE 402
Query: 181 KAARELL 201
++ E +
Sbjct: 403 RSINEAI 409
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 196 AHEQPYGYERACI*RAILHACCGDRTLR*SSTLGQDVPFQKDD 68
+H + + R R +H CG +LR S TLG PF + D
Sbjct: 70 SHHRHRNHPRVQRHRRAIHKTCGAISLRPSLTLGFMPPFLRRD 112
>10_08_0989 + 22069244-22071679
Length = 811
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 154 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 26
R I+H C + T R LG D DE S S K LC
Sbjct: 280 REIIHCCADETTKRIIEELGDDHYAILADECSDLSHKEQLALC 322
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 133 CGDRTLR*SSTLGQDVPFQKDDEVSRTSLKI 41
CGD T S + D+P Q+ V +SL++
Sbjct: 683 CGDATFTDSPSTAMDIPEQRFSPVGLSSLEV 713
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 156 DAPYFTLVAETVLSDDLQLLVKTC 85
D PYF+L A ++D ++LVK C
Sbjct: 1017 DTPYFSLDACCFINDIQEVLVKLC 1040
>11_06_0348 - 22561589-22563656,22563788-22564602
Length = 960
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 204 GEELTSSLTDTSERVFDAPYFTLVAETVLSDDLQLL 97
G++L + SER+ D YF L+ DL+L+
Sbjct: 254 GDDLELLARNISERLKDKRYFALIDNIFNESDLELI 289
>10_01_0251 + 2641320-2643272
Length = 650
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 183 LTDTSERVFDAPYFTLVAETVLSDDLQLLVKT 88
+T R+ FT+V +L D+ Q+ VKT
Sbjct: 370 ITGNYSRIIGKDMFTVVYSGILEDNTQVAVKT 401
>08_02_0632 +
19515234-19515374,19515489-19515656,19518907-19518993,
19519551-19519685,19519778-19519882,19519968-19520059,
19520147-19520252,19520320-19520424,19520516-19520929
Length = 450
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 195 LTSSLTDTSERVFDAPYFTLVAETVLSDDLQLLV 94
L ++ D S R+FD YF L+ V + +LV
Sbjct: 248 LVAANNDCSVRIFDIEYFDLLKHYVFPWSVNILV 281
>07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742
Length = 244
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 122 YSPMIFNSWSRRAFSKGRRGVTYVFENTDG 33
Y P+ F W+ +A G G+ +F+ G
Sbjct: 119 YDPVAFKKWASKAICPGVPGMAQLFQMLRG 148
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 88 VPFQKDDEVSRTSLKIPTVLC 26
VPF+ D++SR +I T LC
Sbjct: 177 VPFENKDDISRRINEIATSLC 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,915,102
Number of Sequences: 37544
Number of extensions: 75441
Number of successful extensions: 202
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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