Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1352
(204 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 3e-23
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05) 26 5.5
SB_13488| Best HMM Match : WSC (HMM E-Value=3.6) 26 5.5
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 26 5.5
SB_12678| Best HMM Match : WSC (HMM E-Value=3.8) 26 5.5
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 26 5.5
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 25 7.2
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 103 bits (246), Expect = 3e-23
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = +1
Query: 40 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLT
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLT 59
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 67 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 201
+RP K L Q+ +G+YG KR+ V AARE+L
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVL 101
>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 85 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAA 189
A +D+ELK I L+N+ V ++Y+ RKAA
Sbjct: 513 AEIDEELKTIKLLDLKNQTVVLPMQYSPRTTRKAA 547
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 144 FTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 49
FT++++ ++D ++ L+ CL T +RL
Sbjct: 1620 FTVISDKTVADTIEALIGACLMSSGTNAALRL 1651
>SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05)
Length = 374
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 31 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 150
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_13488| Best HMM Match : WSC (HMM E-Value=3.6)
Length = 97
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 31 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 150
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 16 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 60
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -1
Query: 204 GEELTSSLTDTSERVFDAPYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL*KYR 37
G + T + Y T E ++ L + CLF R HV+L YR
Sbjct: 763 GNSAANHSTFADALFLEEDYQTAAGELQKAEQLSKTLDMCLFGRCGLAHVKLNDYR 818
>SB_12678| Best HMM Match : WSC (HMM E-Value=3.8)
Length = 117
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 31 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 150
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 31 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 150
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 10 AKMVNNRVPSVFSKTYVTPRRPFEKARLDQE 102
AK+ + R PS + K Y + + EKA D+E
Sbjct: 168 AKLAHMRKPSSYEKKYNSSKATNEKADSDEE 198
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 91 DVPFQKDDEVSRTSLKIPT 35
D+P KDD+V+ +++ +PT
Sbjct: 629 DIPTAKDDKVTLSAMNVPT 647
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,897,368
Number of Sequences: 59808
Number of extensions: 91722
Number of successful extensions: 320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 16,821,457
effective HSP length: 46
effective length of database: 14,070,289
effective search space used: 295476069
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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