Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1352
         (204 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   125   7e-30
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   125   7e-30
AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   125   7e-30
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   125   7e-30
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   104   2e-23

>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/63 (92%), Positives = 61/63 (96%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 196 LLT 204
           LLT
Sbjct: 61  LLT 63


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/63 (92%), Positives = 61/63 (96%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 196 LLT 204
           LLT
Sbjct: 61  LLT 63


>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/63 (92%), Positives = 61/63 (96%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 196 LLT 204
           LLT
Sbjct: 61  LLT 63


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/63 (92%), Positives = 61/63 (96%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 196 LLT 204
           LLT
Sbjct: 61  LLT 63


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  104 bits (249), Expect = 2e-23
 Identities = 51/63 (80%), Positives = 55/63 (87%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 196 LLT 204
           LLT
Sbjct: 60  LLT 62


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,130,905
Number of Sequences: 53049
Number of extensions: 123750
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 24,988,368
effective HSP length: 47
effective length of database: 22,495,065
effective search space used: 449901300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)