Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1352
         (204 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    93   3e-20
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...    90   2e-19
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain...    30   0.18 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   0.56 
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   1.7  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    26   3.0  
At5g40470.1 68418.m04908 expressed protein                             26   4.0  
At3g22540.1 68416.m02848 expressed protein                             26   4.0  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   4.0  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    25   6.9  
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P...    25   6.9  
At1g54330.1 68414.m06194 no apical meristem (NAM) family protein...    25   6.9  
At1g21120.1 68414.m02641 O-methyltransferase, putative similar t...    25   9.1  
At1g21110.1 68414.m02640 O-methyltransferase, putative similar t...    25   9.1  
At1g21100.1 68414.m02639 O-methyltransferase, putative similar t...    25   9.1  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 43/63 (68%), Positives = 51/63 (80%)
 Frame = +1

Query: 16  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 195
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 196 LLT 204
           LLT
Sbjct: 61  LLT 63


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 38/54 (70%), Positives = 48/54 (88%)
 Frame = +1

Query: 43  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 204
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLT
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLT 63


>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
           protein contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 241

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 198 ELTSSLTDTSERVFDAPYFTLVAETVLSDDLQLLVKTCLFKRTTR 64
           E+T  LTD   R  +A       E +L D L LL+  C+F   TR
Sbjct: 134 EITKLLTDLKARRINAASVIARMEELLKDHLNLLLGFCVFLSPTR 178


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 49  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 165
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 34  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 147
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 4    ELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQE 102
            ++A   N  VPS     YV P+R +    +D+E
Sbjct: 1201 DVANSPNTDVPSKLLSQYVAPQRVYTNTLMDEE 1233


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 138 LVAETVLSDDLQLLVKTCLFKRTTRC 61
           L AET+ SD+L  ++ +C F     C
Sbjct: 103 LKAETIFSDELISIISSCCFNLRNLC 128


>At3g22540.1 68416.m02848 expressed protein
          Length = 110

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 107 RSSESTVSATSVKYGASNT 163
           RS E T S+TS K+G SNT
Sbjct: 88  RSGELTNSSTSKKFGRSNT 106


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 91  DVPFQKDDEVSRTSLKIPTVLCCSPS 14
           D  F+   EVSRT   +  ++CCS S
Sbjct: 444 DTIFRLKQEVSRTEDDVKEIVCCSGS 469


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 EYGLRNKREVWRVKYTLARIRKAARELL 201
           +YG+ NKR V  + +T   +R    E+L
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVL 626


>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1314

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 10  AKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 147
           +K+V      +  KT++ P  PF+  R + + K++G+       E+
Sbjct: 796 SKLVTGMEVEIPEKTHIDPPSPFQVTR-ELDTKVVGDLAAATDVEI 840


>At1g54330.1 68414.m06194 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM protein GI:1279639 from [Petunia hybrida]
          Length = 298

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 40  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWR 153
           VF K    P+R  E+   ++E   +G+     K + WR
Sbjct: 147 VFKKNIQIPKRKGEEEEAEEESTSVGKEEEEEKEKKWR 184


>At1g21120.1 68414.m02641 O-methyltransferase, putative similar to
           GI:2781394
          Length = 373

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  VFSKTYVTPRRPFEKARLDQELKIIGEYGL 129
           + SK   TPR P     LD+ L+++  Y +
Sbjct: 70  IASKLPTTPRNPGAPVLLDRMLRLLASYSM 99


>At1g21110.1 68414.m02640 O-methyltransferase, putative similar to
           GI:2781394
          Length = 373

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  VFSKTYVTPRRPFEKARLDQELKIIGEYGL 129
           + SK   TPR P     LD+ L+++  Y +
Sbjct: 70  IASKLPTTPRNPGAPVLLDRMLRLLASYSM 99


>At1g21100.1 68414.m02639 O-methyltransferase, putative similar to
           GI:2781394
          Length = 373

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  VFSKTYVTPRRPFEKARLDQELKIIGEYGL 129
           + SK   TPR P     LD+ L+++  Y +
Sbjct: 70  IASKLPTTPRNPEAPVLLDRMLRLLASYSM 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,933,151
Number of Sequences: 28952
Number of extensions: 60370
Number of successful extensions: 214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 47
effective length of database: 10,709,816
effective search space used: 214196320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)