Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1351
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   2.3  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 73  QIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 198
           QI  ++  K+R  +  K+   +Y+ +    KELN D K + A
Sbjct: 110 QIEALVPRKLRLADGGKTLEINYKLIDPDLKELNLDTKESYA 151


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 562 VEVFCSSCYLKVKTRLSFSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFM 410
           VE F +S  + ++    F F +     S ++SSK+    ++ L   FV F+
Sbjct: 7   VEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFV 57


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 562 VEVFCSSCYLKVKTRLSFSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFM 410
           VE F +S  + ++    F F +     S ++SSK+    ++ L   FV F+
Sbjct: 25  VEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFV 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,606
Number of Sequences: 336
Number of extensions: 3617
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)