Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1351
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    30   0.36 
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.47 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   5.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   7.6  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 316 TQASFLACFFASRSEEIAIAVLALRDLLQIQGFGQLHHI*QLQLFDQNLALFQLSAGHDM 137
           T  +F A  F + S   +I +L  +DL  IQ    L +   L L +  L L  L   H  
Sbjct: 629 TSVNF-APIFTTPSRVRSITLLLPKDLANIQPSDLLFYAVLLVLINGKLVLLSLKKQHSK 687

Query: 136 MLVYSC--VFPNYEFY 95
            L+Y C  +  + EFY
Sbjct: 688 ELLYQCSMLAGDVEFY 703


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 16  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 189
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 190 AVAKYDEVAQTL 225
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 788 WPSACTSAPAXGPAPGY 838
           +P   T  PA GPAPGY
Sbjct: 513 YPGMPTQFPAGGPAPGY 529


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 37  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 210
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 211 VAQ 219
           V Q
Sbjct: 193 VTQ 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,139
Number of Sequences: 5004
Number of extensions: 57928
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)