Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1350
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 42 7e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 37 0.002
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 34 0.017
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.65
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 29 0.86
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 29 0.86
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 29 0.86
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 2.0
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.6
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 4.6
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 26 6.0
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 26 6.0
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 6.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 8.0
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 8.0
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 KGIVFVIDSINIQKEIRDVAEYLY-TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKG 433
K +VFV++S I +++ +V L+ TIL + + LLI CNK D A+ ++ I+
Sbjct: 106 KAVVFVLNSATIDRDVHEVGLMLFDTIL--KCRKHHVPHLLIACNKFDLFTAQPAEKIQQ 163
Query: 434 LLEKEINLVRVTKSNQLQSV 493
LL+ E++ + K+ QL+S+
Sbjct: 164 LLKAELHNILEEKNLQLESI 183
Score = 38.7 bits (86), Expect = 8e-04
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 IFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKI 194
IF R T++ +V L+G SDSGKT LF L Y + + T S++ N E + +
Sbjct: 26 IFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAW-L 82
Query: 195 VDLPGQERLR 224
VDLPG R +
Sbjct: 83 VDLPGHPRAK 92
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 27 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDL 203
FSR ++ + +L++GL +GKT + +L +Q T ++ N+E N + D+
Sbjct: 13 FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72
Query: 204 PGQERLR 224
GQ+++R
Sbjct: 73 GGQDKIR 79
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 3 VTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNK 182
++ +F +F +R +L++GL +GKT + +L + T ++ N+E N
Sbjct: 5 ISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 183 TLKIVDLPGQERLR 224
+ + D+ GQ+++R
Sbjct: 62 SFTVWDVGGQDKIR 75
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 29.1 bits (62), Expect = 0.65
Identities = 27/94 (28%), Positives = 45/94 (47%)
Frame = +2
Query: 368 PLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGTPGRS*VKRVKIS 547
P + L N PLA VI LLE +++ R+ + Q +D + G +I
Sbjct: 515 PAVSLFNLLQFPLAMLPTVISSLLEASVSVSRIYEFLIAQELDYN----GVQRFPATEIP 570
Query: 548 NSLTLEIKSNSQSVPPTRMTMKNPLTSSLCRNGF 649
+ + LEIKS + S ++ T+K +T +L + F
Sbjct: 571 HEICLEIKSGTFSW--SKKTLKQQVTPTLRQINF 602
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 326 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 496
Y +C I++ N+T L + ++ + G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRN 227
VLL+GL ++GKT + L + + I I D+ GQ+ LRN
Sbjct: 19 VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN 75
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 333 IVYRYSATSLISFCILIES-ITNTIPLDYS-CAVQRIYFSVSL 211
I+Y YS T +S C L+ S I NT Y+ V ++YF ++L
Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTHSYALVTVFKLYFELTL 341
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 72 LSDSGKTLLFVRLAYSQYRQTFTSMKENI-EEYITSNKTLKIVDLPGQERLRNKFFEQHK 248
+ D + F + Q Q+F N+ EY T+ ++ I L + + NK+ ++HK
Sbjct: 951 VKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTES--IATLKTELQSLNKYVDEHK 1008
Query: 249 SSLRE 263
S LRE
Sbjct: 1009 SRLRE 1013
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 54 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 206
S L G S +GKTLL LA + ++ ++ EY+ + +++ P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 544 FEFSHIRNKVEFAECSANTNDDEKSADIKPLQEWISEALDWNYHYYFFALP 696
+++ IR+K + +N K D + L +I + WN Y+ ALP
Sbjct: 307 WKWCRIRHKAFLLDEHIRSN---KFEDTRDLISYIESPISWNLKYFISALP 354
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
+L +GL ++GKT L L + ++ EE N DL G ++ R
Sbjct: 23 MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 260 GIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLL 439
GIV+++D + ++ AE + + + + P LIL NK D P A +K L
Sbjct: 90 GIVYLVDCCDFERLSESKAELDALLAMEELAR---VPFLILGNKIDAPGAISEDELKAAL 146
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +3
Query: 39 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVD 200
++LR ++ +G GKT L R Y Q+ T+ + + + ++T L++ D
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 201 LPGQERLRN 227
GQER R+
Sbjct: 67 TAGQERFRS 75
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLF--VRLAYS---------QYR-QTFTSMKENIEEYITSNKTLKIVD 200
VLL+G DSGKT + +RL YS QYR F ++ ++ + + +
Sbjct: 77 VLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMDNSNVSL 136
Query: 201 LPGQERLRNKFFEQHKSSLRE 263
LP E+ R +H S E
Sbjct: 137 LPENEKYRAVILRKHTSQPNE 157
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 600 RVGGTLCEFDFISNVREFEIF 538
R+GG++ EF+FIS ++ IF
Sbjct: 1561 RIGGSIQEFEFISFCQQKRIF 1581
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.4 bits (53), Expect = 8.0
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Frame = +3
Query: 42 TLRNSVLLMGLSDSGKT---LLFVRLAYSQYRQT-----FTSMKENIEEYITSNKTLKIV 197
T+ ++L+G S GK+ L FV+ + YR++ F + I+E TS K L+I
Sbjct: 12 TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN-TSVK-LEIW 69
Query: 198 DLPGQERLRN 227
D GQER ++
Sbjct: 70 DTAGQERYKS 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,989
Number of Sequences: 5004
Number of extensions: 61263
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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