Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1350
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 61 7e-10
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 58 5e-09
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 38 0.006
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 38 0.008
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 38 0.008
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 38 0.008
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 38 0.008
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 38 0.010
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 38 0.010
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 36 0.024
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 36 0.031
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648... 30 1.6
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938... 29 3.6
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 3.6
08_01_0414 + 3684491-3684589,3684770-3684838,3685004-3685033,368... 29 4.8
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 28 8.3
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 28 8.3
01_01_1068 - 8413269-8413589,8414011-8414262,8417472-8417603,841... 28 8.3
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +2
Query: 260 GIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLL 439
GIV+V+D+ + + AEYLY IL + P+LI CNK D+ A + IK L
Sbjct: 131 GIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDKVTAHSKEFIKKQL 190
Query: 440 EKEINLVRVTKSNQLQSVDPSE----GTPGRS 523
EKE+N +R ++ N + S D ++ G PG +
Sbjct: 191 EKELNKLRESR-NAISSADITDEVKLGNPGEA 221
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 9/72 (12%)
Frame = +3
Query: 51 NSVLLMGLSDSGKTLLFVRLA-YSQYRQTFTSMKENIEEYITSN--------KTLKIVDL 203
N+++L GLS SGKT+LF +L S ++ T TSM++N + ++ + K + +VD+
Sbjct: 53 NTIVLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDV 112
Query: 204 PGQERLRNKFFE 239
PG RL+ K E
Sbjct: 113 PGHARLKPKLDE 124
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +2
Query: 260 GIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLL 439
GIVF +D+ + ++ VAEYLY IL + +LI CNK D+ A + IK L
Sbjct: 648 GIVFAVDAQDFLSTMQVVAEYLYDILTKATVVKKRIHVLIFCNKTDKVTAHSKEFIKKQL 707
Query: 440 EKEINLVRVTKSNQLQSVDPSE----GTPGRS 523
EKEIN +R ++ + + S D ++ G PG +
Sbjct: 708 EKEINKLRESRKD-ISSADTTDEVKLGNPGET 738
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 LIFWWIFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKT 185
L F +FSR ++ + +L++GL +GKT + +L + T ++ N+E N +
Sbjct: 3 LTFTKLFSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 186 LKIVDLPGQERLR 224
+ D+ GQ+++R
Sbjct: 63 FTVWDVGGQDKIR 75
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 LIFWWIFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKT 185
L F +FSR + + +L++GL +GKT + +L + T ++ N+E N +
Sbjct: 126 LAFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 185
Query: 186 LKIVDLPGQERLR 224
+ D+ GQ+++R
Sbjct: 186 FTVWDVGGQDKIR 198
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 LIFWWIFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKT 185
L F +FSR + + +L++GL +GKT + +L + T ++ N+E N +
Sbjct: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 186 LKIVDLPGQERLR 224
+ D+ GQ+++R
Sbjct: 63 FTVWDVGGQDKIR 75
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 LIFWWIFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKT 185
L F +FSR + + +L++GL +GKT + +L + T ++ N+E N +
Sbjct: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 186 LKIVDLPGQERLR 224
+ D+ GQ+++R
Sbjct: 63 FTVWDVGGQDKIR 75
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 LIFWWIFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKT 185
L F +FSR + + +L++GL +GKT + +L + T ++ N+E N +
Sbjct: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 186 LKIVDLPGQERLR 224
+ D+ GQ+++R
Sbjct: 63 FTVWDVGGQDKIR 75
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 24 IFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDL 203
+F T VL++GL +GKT + RL + + ++ N+E+ N + D+
Sbjct: 8 LFDSFCTKEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNVAFTVWDV 67
Query: 204 PGQERLR 224
GQ++LR
Sbjct: 68 GGQDKLR 74
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
V+++GL +GKT + RL + T ++ N+E+ N + D+ GQE+LR
Sbjct: 20 VVMLGLDAAGKTTILYRLHMGEVLSTVPTVGFNVEKVQYKNVVFTVWDVGGQEKLR 75
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
V+++GL +GKT + +L + T ++ N+E+ N + D+ GQE+LR
Sbjct: 20 VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLR 75
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
V+++GL +GKT + +L + T ++ N+E+ N + D+ GQE+LR
Sbjct: 20 VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLR 75
>06_01_0853 +
6486027-6486158,6486561-6486692,6486974-6486978,
6487948-6488017,6489456-6489776
Length = 219
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 236
+L +GL ++GKT LF L+ + EE K DL G R+ + +
Sbjct: 24 ILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSIGRIRFKAFDL-GGHRIARRVW 82
Query: 237 EQHKSSLREL 266
+ + LR L
Sbjct: 83 RDYYAQLRRL 92
>07_03_1298 -
25592788-25592890,25593126-25593229,25593747-25593808,
25593957-25594065,25594215-25594355,25594707-25594769,
25594974-25595084,25596140-25596457
Length = 336
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 248 E*SKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLA 409
E + +++VIDS D L +L +QG PLLI NKQ+ P A
Sbjct: 223 EEAHAVIYVIDSA-AASSFEDAKSALEKVLHHEDLQG--VPLLIFANKQELPAA 273
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 254 SKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLIL 382
SK F ++++ +E+ V YLY LCDP + P+L+L
Sbjct: 280 SKQRGFFLEAVPPLEELNTVNLYLYIQLCDPRARLVVLPILVL 322
>08_01_0414 +
3684491-3684589,3684770-3684838,3685004-3685033,
3685540-3685596,3685884-3685954,3686185-3686266,
3686470-3686559,3686647-3686685
Length = 178
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 290 IQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLE 442
I K +D EYL +++ + + N I K+D LA G QV++ L++
Sbjct: 119 ISKAKKDEVEYLKSLIEEVEEKNNAMKARIELLKKDDDLAAGKQVLEKLMQ 169
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 370 PSNIVQQTGPAISKRKPSYQRTT*KRNKFSS 462
PS +V +GP +SKR P+ R + K ++ +S
Sbjct: 518 PSGLVGYSGPLVSKRAPTPARASPKASRTAS 548
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 341 DPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGTPG 517
D +I N+ +++ + + L KGS+ I L E++L K + EG+PG
Sbjct: 336 DGLIPANSMEEIVVLSSEHDNL-KGSESITSKLASEVSLAEGKKKDHENMESSLEGSPG 393
>01_01_1068 -
8413269-8413589,8414011-8414262,8417472-8417603,
8417684-8417812
Length = 277
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 57 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 236
+L +GL ++GKT L L + Q + EE K DL G + R +
Sbjct: 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82
Query: 237 EQHKSSLRELC 269
+ + +LC
Sbjct: 83 DYYAKGAGKLC 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,315,617
Number of Sequences: 37544
Number of extensions: 337483
Number of successful extensions: 948
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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