Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1350
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         36   0.032
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         35   0.056
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.074
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         34   0.13 
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         31   0.91 
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)                       26   0.93 
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         30   1.6  
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  30   2.1  
SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)                   29   2.8  
SB_8201| Best HMM Match : FYVE (HMM E-Value=0.067)                     29   3.7  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 28   8.5  

>SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +1

Query: 517 SFLGKEGKDFEFSHIRN-KVEFAECSANTNDDEKSADIKPLQEWISEAL 660
           + +GK+GKDFEF+ +   KVEF ECSA  N D K+  I  L +WI +A+
Sbjct: 37  ALVGKKGKDFEFADVEPVKVEFVECSAKGNADNKNPQIDALHDWIEKAV 85



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 404 LAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPS 502
           +AK ++ IK  LEKEIN  RVT+S  LQ +D S
Sbjct: 1   MAKSARAIKAQLEKEINTQRVTRSAALQGLDGS 33


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 24  IFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEE-YITSNKTLKIVD 200
           +FS     +  ++++GL  +GKT +  +L   +   T  ++  N+E    T N TL I D
Sbjct: 11  LFSEFGNRQVRIVMLGLDAAGKTTILYKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWD 70

Query: 201 LPGQERLR 224
           + GQ+++R
Sbjct: 71  VGGQDKIR 78


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 63  LMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
           ++GL ++GKT +  RL   +   T  ++  N+E     N +  + D+ GQ+++R
Sbjct: 1   MIGLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIR 54


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 24  IFSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVD 200
           +F+R +  +   +L++GL  +GKT +  +L   +   T  ++  N+E     N +  + D
Sbjct: 8   LFTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWD 67

Query: 201 LPGQERLR 224
           + GQ+++R
Sbjct: 68  VGGQDKIR 75


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +3

Query: 57  VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
           +L++GL  +GKT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R
Sbjct: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 57  VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLR 224
           +L++GL  +GKT +   L   +   T  ++  N+E     N    + D+ GQ+++R
Sbjct: 93  LLMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIR 148


>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
          Length = 410

 Score = 25.8 bits (54), Expect(2) = 0.93
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  RNSVLLMGLSDSGKTLLFVRLAYSQYRQ 131
           +N ++ +GL  SGKT    +LAY   R+
Sbjct: 16  KNVIMFVGLQGSGKTTTCSKLAYYYQRK 43



 Score = 23.8 bits (49), Expect(2) = 0.93
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 114 YSQYRQTFTSM--KENIEEYITSNKTLKIVDLPGQERLRNKFFEQ 242
           Y  Y +T   +  +E +E++   N  + IVD  G+ +     FE+
Sbjct: 75  YGSYTETDPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEE 119


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 263 IVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLA 409
           +++V+DS +  K + +  + L+ +L    + G   P+LI  NKQD P A
Sbjct: 93  VIYVVDSTSAGK-LEEARDELFNLLNSAQLNG--APILIFANKQDCPNA 138



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 57  VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLR 224
           V+++GL  SGKT +  R  + +Y  T  +   N+E          K+ D+ G+E+ R
Sbjct: 24  VVMLGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNR 80


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -3

Query: 277 NHKHNSLRL-LLC-CSKN--LFLSLSCPGRSTIFNVLLEVIYSSIFSFIEVKV 131
           NH+H+   + +LC C KN  LF+S S    +T+   +L ++Y   FS++ + +
Sbjct: 233 NHRHSQHAVTVLCRCHKNKILFISSSFVQLTTVTRAMLALMYPLKFSYVYIPI 285


>SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)
          Length = 281

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 141 SMKENIEEYITSNKTLKIVDLPGQERLRN-KFFEQHKSSLREL 266
           +   N++++I S K  K  +LP + +++N K   Q K + REL
Sbjct: 48  NFNNNLDKFIASTKEKKNENLPNEGQIKNKKILYQSKKTCREL 90


>SB_8201| Best HMM Match : FYVE (HMM E-Value=0.067)
          Length = 166

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +2

Query: 341 DPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL--LEKEINLVRVTKSNQLQSVDPSEGTP 514
           DPI+ G     L++C K  + LAK  + +K +  ++ EIN +      +++ + P E   
Sbjct: 50  DPIVYGKENSRLLICTKCYKRLAKLERALKHVDSVKLEINELFTATKRRVKRLRPPESAA 109

Query: 515 GRS*VKRVKISNSLTLEIKSNSQSVPPTRMT 607
               V    ++ SL      N  S  P   T
Sbjct: 110 ----VDPKPVAKSLKFSSAENLSSAVPNVST 136


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 292 TERNQRCSRIPIHNLV*SDHSGKHNSPSNIVQQTGPAISKRKP 420
           ++ N+ CSR P ++++ S+  G   SP +  + TG   S  KP
Sbjct: 5   SKSNRDCSRTPKYSILASNIVGVQLSPCSEYESTGDPASDSKP 47


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 1   Q*PSYFGGFSLEGILFATQYC*WAYQTLARLC 96
           Q P  + G   E +LF  +Y  W YQ + R C
Sbjct: 483 QCPWVYSGTVRENVLFGKKYQQWKYQVVVRAC 514


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 57  VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNK-TLKIVDLPGQERLR 224
           +LL+GL +SGKT +   LA         +   NI+   +     L + D+ GQ ++R
Sbjct: 20  ILLLGLDNSGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWDIGGQRKIR 76


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +2

Query: 341 DPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL--LEKEINLVRVTKSNQLQSVDPSEGTP 514
           DPI+ G     L++C K  + LAK  + +K +  ++ EIN +      +++ + P E   
Sbjct: 50  DPIVYGKENSRLLICTKCYKRLAKLERALKHVDSVKLEINELFTATKRRVKRLRPPESAA 109

Query: 515 GRS*VKRVKISNSLTLEIKSNSQSVPP 595
               V    ++ SL      N  S  P
Sbjct: 110 ----VDPKPVAKSLKFSSAENLSSAVP 132


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 21  WIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVD 200
           +I  +  T    VL +G + SGKTL       ++    F S   N     ++N+T  I+D
Sbjct: 587 FILEKLVTNHKKVLCVGPTGSGKTLAISDKLLNKMPHAFLSHFINFSARTSANQTQDIID 646

Query: 201 LPGQERLRNKF 233
               +R +  F
Sbjct: 647 GKLDKRRKGVF 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,009,369
Number of Sequences: 59808
Number of extensions: 420309
Number of successful extensions: 1233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)