Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1350
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.92 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 588 TLCEFDFISNVREFEIF--TLFT 526
           T C FD++++  E  IF  T+FT
Sbjct: 195 TSCSFDYLTDTNEIRIFVATIFT 217


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 259 GNCVCD*FYQYTERNQRCSRIPI 327
           G C C   YQ     Q C+  PI
Sbjct: 245 GGCHCKPGYQADVEKQECTECPI 267


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 332 LCIGILLHL*FLSVY**NQSQTQFP*TTLVLFKEFI 225
           L +G+L+HL  L V    ++   FP  TL++    I
Sbjct: 27  LTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSII 62


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 213 ERLRNKFFEQHKSSLRELCL*LILSIYRKKS 305
           +RLRN  FE        +CL       RKKS
Sbjct: 99  DRLRNDLFECENKEKSNVCLKFEEQKRRKKS 129


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 592 ANTNDDEKSADIKPLQE 642
           + T+ DE+ AD +PL++
Sbjct: 317 SETSSDEEEADTRPLKK 333


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 627 DVSGFFIVIRVGGTLCEFD 571
           D+S F  V  V GTL +FD
Sbjct: 85  DISNFTDVDPVYGTLADFD 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,937
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)