Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1349
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   6.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   6.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.2  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 244 ILGLSPLNRYAHKFLIRPIESGFIDGGWIFVAYFAGRAQGLPGVK 378
           +LGL+P+  Y  KF +  +      G  I + Y A   + L  +K
Sbjct: 90  LLGLAPVKFYVQKFYVVILAFLLTAGAIISLVYQAPVYKELTDIK 134


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 244 ILGLSPLNRYAHKFLIRPIESGFIDGGWIFVAYFAGRAQGLPGVK 378
           +LGL+P+  Y  KF +  +      G  I + Y A   + L  +K
Sbjct: 16  LLGLAPVKFYVQKFYVVILAFLLTAGAIISLVYQAPVYKELTDIK 60


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 630 LLSCGRAFRLPTRNVEIGWSKSYYIRLMHLVITS 731
           L+    A  LP   +++ W   + IRLM+ V T+
Sbjct: 290 LIEVCNAGYLPFILLQVAWIVLHLIRLMYQVTTN 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,859
Number of Sequences: 336
Number of extensions: 3523
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)