Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1349
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    31   0.18 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.2  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   9.1  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   9.1  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/28 (39%), Positives = 23/28 (82%)
 Frame = +2

Query: 65  IEEASLQWLAEMCDGDARVALSALELAL 148
           +E + + +++ + DGDAR+AL+ALE+++
Sbjct: 263 VETSIIDYISAITDGDARMALNALEMSI 290


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 369 WC*VITGAYRYGHVNTQGGYLETLVLNLSFTEQRLLYFTNRN 494
           W  V+ G +    ++ +    ++L  NLS T Q +LY  NRN
Sbjct: 473 WNEVLFGFFNDESMDIETIPFDSLSRNLSLTVQTVLYLKNRN 514


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 763 HLKENQFEGVPLVITRCIKRI*YDFDQP--ISTLRVGNLKARPHESSRTKHSV 611
           HL++ ++   P  +    + + YD D+P  IS LR  +L +     S+ +H V
Sbjct: 420 HLRKGEYSRFPYSVLEIRECVRYDEDEPLWISELRNSHLISEIDGFSKYEHGV 472


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 224 FHL*YHHVLTLLGR 183
           FHL YHH+ T++G+
Sbjct: 267 FHLFYHHLTTMMGQ 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,031
Number of Sequences: 5004
Number of extensions: 58254
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)