Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1349
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84...    29   3.1  
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    29   4.1  
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    28   7.2  
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003...    28   9.5  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   9.5  

>01_01_0112 -
           838809-839748,839781-839908,840203-840274,840306-840374,
           840634-840698,840732-840907,841006-841757
          Length = 733

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 560 PTTSKNTECNTASVKVKNGMLRTATFVRSSF*VTNSQR 673
           PTT+ NT C+T  ++++    R + FV  S  + N+++
Sbjct: 124 PTTTLNTGCHTIHIELEPASSRWSAFVNCSQEINNNEK 161


>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +2

Query: 104 DGDARVALSALELALNARDPGSDVHLSGPAVLTHDDIKDGIKVLLFLSLAFP 259
           +GDAR AL  +  ALN    G D+ +SG  V TH    +  KVL  +S   P
Sbjct: 662 EGDARSALITMLQALNHAKNGVDI-VSGTKVRTHFARPNWRKVLSKISSKHP 712


>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 491 KRINVSGRNRQHGDTYPCGLTR 556
           K +NVS  + Q  DT PCG+T+
Sbjct: 738 KVVNVSACSNQDSDTTPCGVTK 759


>01_07_0058 +
           40799547-40799810,40799942-40799978,40800279-40800362,
           40800563-40800615
          Length = 145

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 527 GDTYPCGLTRGPTTSKNTECNTASVKVKNGML 622
           GD  PC    G   +K   CN   +KV+NG++
Sbjct: 89  GDPVPCERCAGNGGTKCVFCNDGKMKVENGVV 120


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 393  YRYGHVNTQGGYLETLVLNLSFTEQRL 473
            YRY H+ +Q  YL+ ++ + ++T QRL
Sbjct: 1375 YRYFHILSQVAYLDDIMSSWAYTFQRL 1401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,894
Number of Sequences: 37544
Number of extensions: 368657
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)