Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1349
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    42   7e-04
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         30   2.4  
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  29   5.5  
SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)           28   9.6  
SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)                28   9.6  

>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +2

Query: 62  LIEEASLQWLAEMCDGDARVALSALELALNARDPGSDV 175
           +IE  ++  LA +CDGDARVAL+ L+LA+ ++  GS +
Sbjct: 364 IIERDAITALANLCDGDARVALNGLQLAVQSQTSGSSL 401


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 285 KFMSIPV*RGKAKDKNKRTFIPSLISSCVNTAGPLRCTSEPG 160
           K+  +P  R  A +   R         CVNT G  RCT +PG
Sbjct: 118 KYSKVPASRDLADEDECRERKGGCQHICVNTIGSYRCTCKPG 159


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  QWLAEMCDGDARVALSALELALNARD 160
           Q + E C+GD   AL ALE AL A D
Sbjct: 741 QGIKEECEGDLAEALPALEAALKALD 766


>SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)
          Length = 321

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 237 CFY-PWPFPAKQVCS*ISN*TNRKWFH*WWVDFCCLFCWPSS 359
           CFY  WPF    +C  +     +KW   WW+ F    C  S+
Sbjct: 177 CFYLQWPFLFLTLCFSLMPSVFQKWSISWWMYFNKFSCHDST 218


>SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)
          Length = 200

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 210 SSCVNTAGPLRCTSEPG 160
           +SCVNT G   CT +PG
Sbjct: 133 ASCVNTIGSFACTCKPG 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,098,961
Number of Sequences: 59808
Number of extensions: 432893
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)