Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1349
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    40   0.002
At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    29   2.6  
At5g06530.2 68418.m00737 ABC transporter family protein                29   4.5  
At5g06530.1 68418.m00736 ABC transporter family protein                29   4.5  
At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    29   4.5  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    28   7.9  

>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/59 (33%), Positives = 36/59 (61%)
 Frame = +2

Query: 53  NRYLIEEASLQWLAEMCDGDARVALSALELALNARDPGSDVHLSGPAVLTHDDIKDGIK 229
           N   ++++ +++LA  CDGDARVAL+ALE++       +       AV++ DD K+ ++
Sbjct: 279 NSVEVDDSVIEFLANNCDGDARVALNALEISATM----ATTRAGTDAVVSIDDAKEALQ 333


>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 DGDARVALSALELALNARDPGSDVHLSGPAVLTHDDIKDGIKVLLFLS 247
           +GDAR AL  +  ALN    G D+ +SG  V TH    +  KVL  LS
Sbjct: 854 EGDARSALITMVQALNHAKNGVDI-VSGTRVRTHFARPNWKKVLTKLS 900


>At5g06530.2 68418.m00737 ABC transporter family protein
          Length = 691

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 252 PFPAKQVCS*ISN*TNRKWFH*WWVDFCCLFC 347
           P P  +     S    R+W   WW  +C LFC
Sbjct: 474 PVPLDEEAKAKSTRLKRQWGTCWWEQYCILFC 505


>At5g06530.1 68418.m00736 ABC transporter family protein
          Length = 751

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 252 PFPAKQVCS*ISN*TNRKWFH*WWVDFCCLFC 347
           P P  +     S    R+W   WW  +C LFC
Sbjct: 474 PVPLDEEAKAKSTRLKRQWGTCWWEQYCILFC 505


>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 345 KISNKNPPTINETTFDWSN*KFMSIPV*RGK 253
           K+ NK+P    E T+DW N KF  I   RGK
Sbjct: 228 KLMNKDP---KEITWDWVNKKFKEIVAARGK 255


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 429 LETLVLNLSFTEQRLLYFTNRNALMFQAEIGSMVIPTRADSQEVLPPVRIQ 581
           +ETL+  L  T QRL+   NRN L+ +A++    +   AD+Q+ L  + +Q
Sbjct: 427 VETLMSKLEDTRQRLVCSENRNRLL-EAQVSEEQL-AFADAQKKLEELDLQ 475


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,144
Number of Sequences: 28952
Number of extensions: 303991
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)