Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1348
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    29   0.87 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   6.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.1  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   8.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   8.1  

>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 682 WGPKAL-VVMLEYKEVEVAKAILFEESGGICGLRWFNGLWFRLWKLRYLRFTWSPNIAVT 506
           WG   L VV   Y E  V  +   + S  I  LR  + L   + KLR    +W+P  A  
Sbjct: 185 WGADTLPVVKFNYTETSVLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSISWNPMEAFN 244

Query: 505 FSA*SQ 488
           F A S+
Sbjct: 245 FVAGSE 250


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 478 PENINPLGQSCSKDQPSQQLRKLLHDKG 395
           P N +PL  S +K  PS +L     DKG
Sbjct: 416 PANSSPLAASSTKSLPSSELLDSSSDKG 443


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 510 TAIFGLQVNLKYRNFHNRNHSPLNQRSPQIPPDSSNSIAFATSTSLYSSITTNAFGPQAP 689
           T I+  Q + K ++ H+++H     +S       ++  + + +T+   SIT     P +P
Sbjct: 540 TKIYKAQQH-KQKSSHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSITPADPVPTSP 598

Query: 690 LPLQ-KPVK 713
            PL  +PVK
Sbjct: 599 KPLAIEPVK 607


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 573 PLNQRSPQIPPDSSNSIAFATSTSLYSSITTNAFGPQAP 689
           PL++RSP     +      AT  +  SS  + +F PQ P
Sbjct: 93  PLSKRSPPFLAYTPKRAVSATLATTQSSPISTSFNPQLP 131


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 481 SPENINPLGQSCSKDQPSQQLRKL 410
           S EN+  +G S +K Q +++LRKL
Sbjct: 102 SLENLTKMGVSAAKFQTTEELRKL 125


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 399 LSCNSFLNCWDGWSFEQDCPKGLMFSGDGYCDYAENVTAIFGLQVNL 539
           L C + +   DG+ F  D     +FS   YC   +N  A+  +   L
Sbjct: 427 LICRAHMVVEDGYEFFNDRTLCTVFSAPNYCGEFDNWGAVMSVNSEL 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,077
Number of Sequences: 5004
Number of extensions: 55320
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)