Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1348
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854...    30   1.6  
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    30   2.1  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   3.7  
03_05_0871 + 28396964-28399843                                         29   3.7  
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163...    28   6.4  
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515...    28   8.5  

>10_08_0001 +
           13984436-13984514,13984804-13984926,13985181-13985468,
           13985560-13985690,13985764-13985979,13986059-13986442
          Length = 406

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 133 YTNPYLRDLALHADKLPFYGNFLNPFFAFIRTSHSSSLPALQFLSPTK 276
           YT+ Y+  + L +  +PF+G+F++   A   T     LPAL FL   K
Sbjct: 309 YTSAYMVVITLISAAMPFFGDFVSVCGAVGFTPLDFVLPALAFLKAGK 356


>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = +3

Query: 573 PLNQRSPQIPP-DSSNSIAFATSTSLYSSITT----NAFGPQAPLPLQKPV 710
           P+    PQ+PP  SS+S+A ++S  L SS++     + FGP  P  L +PV
Sbjct: 60  PVAGSKPQLPPFSSSSSVASSSSPPLPSSVSVAIAGDGFGP-PPNTLTEPV 109


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 478 PENINPLGQSCSKDQP 431
           P+N+NPLGQ  SK +P
Sbjct: 755 PDNVNPLGQESSKHEP 770


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 67  SQTDGRQKRLLFYDEDGNLVKTYTNPYLRDLALHADKLPFY 189
           ++++ R+ R  FY E+G+ V      Y R LALH   + F+
Sbjct: 517 ARSEARESRF-FYCENGDAVSRAEGKYYRRLALHTKLIAFH 556


>06_01_0213 +
           1628974-1629339,1629441-1629590,1630935-1631095,
           1631178-1631892,1632045-1632091,1632295-1632316
          Length = 486

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 579 NQRSPQIPPDSSNSIAFATSTSLYSSITTNAFGPQAPLP 695
           N+ SP  PP S  + + A  + ++ S++     P+A LP
Sbjct: 38  NRASPPPPPGSPTAASAAAVSPIHRSLSRGLLAPRAALP 76


>01_02_0122 +
           11348686-11348948,11350492-11350587,11351513-11351524,
           11354009-11354699
          Length = 353

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 436 QPSQQLRKLLHDKGDGTWALFPSQAGLL 353
           +  ++L + + + G+G W   P  AGLL
Sbjct: 20  EEDEKLARYIRENGEGAWRSMPKNAGLL 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,311
Number of Sequences: 37544
Number of extensions: 367040
Number of successful extensions: 1156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)