Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1348
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 34 0.100
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 32 0.53
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 31 0.70
SB_52448| Best HMM Match : X (HMM E-Value=1.7) 31 0.70
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17) 30 2.1
SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44) 30 2.1
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 29 3.7
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_47825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_52345| Best HMM Match : DUF892 (HMM E-Value=3.2) 28 6.5
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 28 8.6
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 41.1 bits (92), Expect = 9e-04
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 342 PAIVSNPACEGKR-AQVPSPLSCNSFLNCWDGWSFEQDCPKGLMF 473
P +P CE K+ P +CN F+ C +G+++++DCP L F
Sbjct: 589 PTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKF 633
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 INPKKDPAIVSNPACEGKR-AQVPSPLSCNSFLNCWDGWSFEQDCPKGLMFS-GDGYCDY 497
+ P +P C GK+ + +CN F+ C +G+ + DCP L + G C++
Sbjct: 504 VPPTTKAPFTKSPFCVGKQNGKYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEW 563
Query: 498 AENV 509
A+ V
Sbjct: 564 ADTV 567
Score = 31.5 bits (68), Expect = 0.70
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 366 CEGKR-AQVPSPLSCNSFLNCWDGWSFEQDCPKGLMFS 476
CEG++ ++CN F+ C + ++ DCP L F+
Sbjct: 731 CEGRKDGDYVDAVNCNGFIKCSNQLTYYFDCPSNLRFN 768
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 396 PLSCNSFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENV 509
P +C F++C + ++ CP+ L F+ +CD ENV
Sbjct: 454 PDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENV 492
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 34.3 bits (75), Expect = 0.100
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 390 PSPLSCNSFLNCWDGWSFEQDCPKGLMFSGD-GYCDYAEN 506
P P C ++ C +G ++E CP GL ++ + YCD+ N
Sbjct: 95 PHPDFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDWPFN 134
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 366 CEGKRAQVPSPLSCNSFLNCWDGWSFEQDC 455
C K +PS C+ +C DGW QDC
Sbjct: 2294 CGSKNLCIPSSWLCDGSDDCGDGWDERQDC 2323
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 31.5 bits (68), Expect = 0.70
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 604 GGICGLRWFNGLWF 563
G CG WFNGLWF
Sbjct: 1041 GAYCGSEWFNGLWF 1054
>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
Length = 549
Score = 31.5 bits (68), Expect = 0.70
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 604 GGICGLRWFNGLWF 563
G CG WFNGLWF
Sbjct: 515 GAYCGSEWFNGLWF 528
>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 31.5 bits (68), Expect = 0.70
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 604 GGICGLRWFNGLWF 563
G CG WFNGLWF
Sbjct: 373 GAYCGSEWFNGLWF 386
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +3
Query: 357 NPACEGKRAQVPSPLSCNSFLN---CWDGWSFE----QDCPKGLMFSGDGYCD 494
NP C G R CNS + C +GW+ + DCP +G G+C+
Sbjct: 1291 NPGCPGHRTDCSGHGECNSATHVCVCENGWTGDGCEIPDCPGNPDCAGRGHCN 1343
>SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)
Length = 271
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 1 TKPSTMIKVLSFVLLMIFGGCSSQTDGRQKRLLFYDEDGNLVKTYTNPYLRDLALH 168
T T+ ++ +L IF G S+ D F D DG L Y YLR ALH
Sbjct: 49 TSVFTLTRIKDSLLGRIFSGRQSELDKDNSGKYFIDRDGFL---YILDYLRSKALH 101
>SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)
Length = 262
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +3
Query: 528 QVNLKYRNFHNRNHSPLNQRSPQIPPDSSNSIAFATSTSLYSSITTNAFGPQAPLPLQKP 707
Q + F +R P QR P +PP + FA T +T P P P ++P
Sbjct: 193 QATIPPPRFTSRPRLPQTQRPPTLPPLTFPPRTFAPLTQPPRPVTRRRDVPPTPAPTRRP 252
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +3
Query: 384 QVPSPLSCNSFL-NCWDGWSFEQDCPKGLMFSGDGYCDYAENVTAIFGLQVNLKYRNFHN 560
++ + LS + L N DGWS Q CP L D ++ V++ G +V R+
Sbjct: 8 EISASLSSSMVLANDDDGWSTNQACPVQLFRESDS--KNSKAVSSPEGFEVKAS-RSTKQ 64
Query: 561 RNHSPLNQRSPQIPPDSSNSIAFATSTSLYSSITTNA 671
N SP+ S + A +S++ + TNA
Sbjct: 65 PTTIQANNTSPEDVSSSESETADTSSSNTSQARNTNA 101
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 604 GGICGLRWFNGLWF 563
G CG WFNG WF
Sbjct: 1418 GAYCGSEWFNGRWF 1431
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -1
Query: 433 PSQQLRKLLHDKGDGTW--ALFPSQAG 359
PS+QL+ + DKGDGT+ + PS++G
Sbjct: 606 PSRQLQPPVEDKGDGTYCASFTPSESG 632
>SB_47825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 597 IPPDSSNSIAFATSTSLYSSITTNAFGPQAPLPLQKP 707
+P SNS++ A +T +T+N+ P PL L++P
Sbjct: 2 LPKAGSNSLSSAKNTIGSYEVTSNSCSPGDPLVLERP 38
>SB_52345| Best HMM Match : DUF892 (HMM E-Value=3.2)
Length = 127
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 240 LAACLAIPVSNEIIQKIEYDPLYQQELIINPKKDPAIVSNPA 365
+ +CLA V+ ++ I L L++N +K+PA+ S PA
Sbjct: 80 ITSCLAQDVTAQVQGFIPSGSLPTHALLLNEEKEPALDSTPA 121
>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 294 YDPLYQQELIINPKKDPAIVSNPACEGKRAQVPSPLSCNSF-LNCWDGWSFEQDC 455
YD Y + I+ K DP +V NP CE A S LS S NC +G+ F + C
Sbjct: 96 YDWFYME--ILGKKYDPCLVDNP-CE-NGATCSSVLSTGSLRCNCANGF-FGETC 145
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 351 VSNPACEGKRAQVPSPLSCNSFLNCWDGWSFEQDCPKGL 467
VSN + P C+ ++ C +G + E CP GL
Sbjct: 332 VSNFCQDKADGNYAHPSKCDMYITCSNGIAHEMPCPAGL 370
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +3
Query: 330 PKKDPAIVSNPACEGKRAQVPS----PLSCNSFLNCWDGWSFEQDCPKGLMFSGDGYCDY 497
P K P + P+ +G R P++C+ W+G D +G+ + DG+
Sbjct: 145 PSKKPGPTAEPSAKGMRINCDGWEGMPINCDE----WEGMRINWDGWEGMRINWDGWEGM 200
Query: 498 AENVTAIFGLQVN 536
N G+++N
Sbjct: 201 RINCDGWEGMRIN 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,313,010
Number of Sequences: 59808
Number of extensions: 406116
Number of successful extensions: 4735
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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