Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1348
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    40   0.002
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    36   0.029
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    36   0.029
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical...    28   5.8  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified vi...    28   7.6  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 366 CEGKRAQVPSPLSCN-SFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAEN 506
           C GK        +C  SF  C DG +F  DCP  L+F+   G CD+AEN
Sbjct: 433 CTGKPNGKYIKEACTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAEN 481



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 IINPKKDPAIVSNPACEGKRAQVPSPLSCNS-FLNCWDGWSFEQDCPKGLMF 473
           ++NPK  P     P  +G  A     + C+S +L C +   +EQ CP+GL F
Sbjct: 35  VLNPKGPPC----PDGDGLYA-----VGCSSKYLQCVNNVEYEQSCPEGLYF 77



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 405 CNSFL-NCWDGWSFEQDCPKGLMFSG-DGYCDYAENV 509
           C  +L  C++  +F+  CP GL +S     CD  ENV
Sbjct: 701 CEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENV 737


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 360 PACEGKRAQV-PSPLSCNSFLNCWDGWSFEQDCPKGLMFSGD-GYCDYAENVTAIFGL 527
           P CEGK   + P+ +   +FL C  G +   DCP  L+F+     CD+  +V    GL
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGL 302


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 360 PACEGKRAQV-PSPLSCNSFLNCWDGWSFEQDCPKGLMFSGD-GYCDYAENVTAIFGL 527
           P CEGK   + P+ +   +FL C  G +   DCP  L+F+     CD+  +V    GL
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGL 302


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 408 NSFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENV 509
           +SF  C +G      CP GLMFS  +  CDY  NV
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNV 287


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 540 KYRNFHNRNHSPLNQRSPQIPPDSSNSIAFATSTSLYSSITTNAFGPQAPLP 695
           +Y NF+++   P   RSP + P +      A   ++Y   +     P++P+P
Sbjct: 284 QYGNFYSQPSQPAQNRSPPVAPQA------APGGTVYKRTSREKLSPKSPVP 329


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 267 SNEIIQKIEYDPLYQQELIINPKK 338
           S +++Q I+  PLY+ E+ INPK+
Sbjct: 150 SEDLLQFIDQQPLYKIEMGINPKR 173


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 267 SNEIIQKIEYDPLYQQELIINPKK 338
           S +++Q I+  PLY+ E+ INPK+
Sbjct: 267 SEDLLQFIDQQPLYKIEMGINPKR 290


>AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical
           protein Y71G12B.30 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 DGWSFEQDCPKGLMFSGDGYCDYAENVTAIFGLQVNLKYRNFHN 560
           DG+ F  D     +FS   YC + +N+ A+  +  N+  +N  N
Sbjct: 265 DGYEFFADKKLVTIFSAPCYCGHFDNLGAVLQVATNMVSKNGSN 308


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 682 WGPKALVVMLEYKEVEVAKAILFEESGGICGLRWFNGLW 566
           W P  L+ + ++  + VA   LFE    I G+  FNG W
Sbjct: 167 WIPVVLIAITQFFSITVALGNLFE----IIGILAFNGFW 201


>U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 7 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 306 IVGHTQSSE*FRWRQELQGRQRAAM---RGPNKCEERIEEVAIERQF 175
           ++ H   S  + + +  +   R AM   + P  C++ IEE+ +E+QF
Sbjct: 241 VIWHAPESPRYLFIENREDEARKAMSYYQSPADCKQSIEEILLEKQF 287


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
           protein Y113G7C.1 protein.
          Length = 1494

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 573 PLNQRSPQIPPDSSNSIAFATSTSL---YSSITTNAFGPQAPLPLQKP 707
           P  Q SP++ PDS+ +   A S      Y+SI T    P +P  ++ P
Sbjct: 61  PKTQGSPRLTPDSNRAPHIAVSQDALQDYTSIVTGQEPPASPPTVKAP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,981
Number of Sequences: 27780
Number of extensions: 313220
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)