Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1348
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15240.1 68418.m01785 amino acid transporter family protein l...    30   1.8  
At4g01915.3 68417.m00254 expressed protein                             29   2.3  
At3g28670.1 68416.m03578 expressed protein                             29   3.1  
At1g70370.1 68414.m08095 BURP domain-containing protein / polyga...    29   3.1  
At5g35550.1 68418.m04229 myb family transcription factor (MYB123...    28   5.3  
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put...    28   7.1  
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    27   9.3  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    27   9.3  

>At5g15240.1 68418.m01785 amino acid transporter family protein low
           similarity to amino acid transporter system A3 [Homo
           sapiens] GI:13876616; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 423

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 178 LPFYGNFLNPFFAFIRTSHSSSLPALQFLSPTKSFRRL 291
           LPF+G+ ++   AF+  S S  LP L +L  +  ++RL
Sbjct: 353 LPFFGDLMSLVGAFLSASASVILPCLCYLKISGKYQRL 390


>At4g01915.3 68417.m00254 expressed protein
          Length = 106

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 697 RGNGA-WGPKALVVMLEYKEVEVAKAILF-EESGGICGLRWFNGLWFRLW 554
           RG+ + W P   V++  + + E+ K++LF + SG    L +F   +F LW
Sbjct: 16  RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSRSCLAYFTVQFFHLW 65


>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 91  RLLFYDEDGNLVKTYTNPYLRDLALHADKL 180
           RL  Y E G+  +T+T+   ++LA+HA +L
Sbjct: 203 RLPIYGEGGSSAQTFTDTIRKELAIHAKEL 232


>At1g70370.1 68414.m08095 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 626

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 YDEDGNLVKTYTNPYLRDLALHADKLPFYGNFLN 204
           Y +DGN+V      Y R+ A H DK   YG   N
Sbjct: 142 YSKDGNVVTDSFRRYSRNAAGHDDKFTVYGENSN 175


>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 258

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 460 LGQSCSKDQPSQQLRKLLHDKGDGTWALFPSQAGL 356
           L +    D   + LR  +   G+G W+  P+QAGL
Sbjct: 14  LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGL 48


>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from [Arabidopsis thaliana]
          Length = 675

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 483 GYCDYAENVTAIFGLQVN--LKYRNFHNRNHSPLN 581
           GYCD  EN+  I+    N  LK      RNH  LN
Sbjct: 429 GYCDEGENLALIYEYMANGDLKEHMSGTRNHFILN 463


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 436 QPSQQLRKLLHDKGDGTWALFPSQAGL 356
           +  ++L   +HD G+G W   P +AGL
Sbjct: 20  EEDKKLISYIHDHGEGGWRDIPQKAGL 46


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 436 QPSQQLRKLLHDKGDGTWALFPSQAGL 356
           +  ++L   +HD G+G W   P +AGL
Sbjct: 20  EEDKKLISYIHDHGEGGWRDIPEKAGL 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,344,337
Number of Sequences: 28952
Number of extensions: 296792
Number of successful extensions: 964
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)