Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1347
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 185 7e-48
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 9e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 1e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 9e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 4e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.016
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.11
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.44
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 29 1.0
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 28 1.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 5.4
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 7.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 185 bits (450), Expect = 7e-48
Identities = 105/172 (61%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA-CSRCTRPVVPPVSCWTPATVSPTPCPST 592
APLNPK+NREKMTQI+FETFN PA YVAIQA S + + V+ T P
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIY 166
Query: 593 KDTHSPTPSLRLDLSPVATSQTTLMKILTERRLLVHYHPPNGEIVRDIKEKL 748
+ P +RLDL+ + LMKIL ER EIVRDIKEKL
Sbjct: 167 EGYALPHAIMRLDLAGRDLTD-YLMKILMERG-YTFSTTAEREIVRDIKEKL 216
Score = 109 bits (261), Expect = 6e-25
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSY
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSY 53
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 9e-23
Identities = 41/96 (42%), Positives = 69/96 (71%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 400
+ G + +++GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 401 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
+LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 56.0 bits (129), Expect = 6e-09
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +1
Query: 505 SLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILASGLKPGRDLTDY 660
++LSLYA G ++G+V+DSGDGV+H VP+YE L H + + GRD T Y
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV-AGRDATRY 188
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 105 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 209
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 1e-20
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 430
+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Query: 431 KANREKMTQIMFETFNTPAMYVAIQA 508
NRE +IMFE+FN +Y+A+QA
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQA 161
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 538 TGIVLDSGDGVSHTVPIYEGYALPHAILASGLKPGRDLT 654
TG V+DSGDGV+H +P+ EGY + +I L GRD+T
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL-AGRDVT 217
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSY 254
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSY 54
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.5 bits (222), Expect = 3e-20
Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 424
+ +G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 425 NPKANREKMTQIMFETFNTPAMYVAIQ 505
N+EK+ + +ET N PA+ ++Q
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQ 142
Score = 67.7 bits (158), Expect = 2e-12
Identities = 30/51 (58%), Positives = 42/51 (82%)
Frame = +1
Query: 508 LLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILASGLKPGRDLTDY 660
+L+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + GRD+TDY
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEI-GGRDVTDY 193
Score = 59.7 bits (138), Expect = 5e-10
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMF 57
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 227 GRYGTEGLLLGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 403
G + L G+E K + +K I +G V NWD +W + +L+ P EHP+
Sbjct: 42 GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Query: 404 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 505
L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 9e-11
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 397
RD + L+G++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 398 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 502
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 212
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 508 LLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 597
L S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 154 LFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 4e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 311 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 490
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 491 YVAIQA 508
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.016
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 302 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 469
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 470 TFNTPAMYVAIQ 505
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 508 LLSLYASGRTTGIVLDSGDGVSHTVPIYEG 597
L+ LYA G G+V+D G + PI +G
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 362 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 505
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 554 TPATVSPTPCPSTKDTHSPTPSLRLDLSP 640
TPA +P P P+ K H P P +R +SP
Sbjct: 728 TPAPPTPAPTPAVKH-HPPPPPVRSSISP 755
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 28.7 bits (61), Expect = 1.0
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 401 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQACSRCTRPVVPPVSCWTPAT-VSPT 577
V+ +EA +A RE+ + N P+ ++ SR + +PP +P S T
Sbjct: 540 VVRSEAKKQIEAQREEARK---GNVNMPSALSPLRIRSRPSPLSLPPEPLLSPTIDYSAT 596
Query: 578 PCPSTKDTHSPTPSLRL-DLSPVATSQT 658
P P SP PSL++ +PV T+ T
Sbjct: 597 PFPLEPPPESPGPSLQIPSNNPVYTNLT 624
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 334 IPVSDDSVFDGVFEGQDTSFALCLIS**ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 155
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 154 PALHIP 137
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 578 PCPSTKDTHSPTPSLRLDLSPVATSQTTLMKILTERRLLVHYHPPNGEIVR 730
P P + D PTP ++ P S + L R L+ Y N E+V+
Sbjct: 973 PYPDSVDDFDPTPYVKASCRPYMISSSNLATTRLPRDLVDVYETYNIEVVK 1023
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 509 CSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 610
C R TR + PPV+C TP P C K H P
Sbjct: 624 CGR-TR-LYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 518 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRLDLSPVATSQTTLMKI 673
C + PV + T S TP P+T + +PTP+ S T+Q+T M++
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPT---TTSTTTTAQSTGMQL 880
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 527 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 619
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 533 VPPVSCWTPATVSPTPCPSTKDTHSPTPSLRLDLSPVATSQ 655
VPPV P+T P P PS P P+ + P +S+
Sbjct: 1207 VPPVP--PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE 1245
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 232 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 98
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 404 LLTEAPLNPKANREKMTQIMFETFN 478
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 238 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 146
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 457 DH-VRNIQHARHVRRHPSLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 609
DH V+N A ++R++ ++ S +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 471 HST-RPPCTSPS---KPALAVRVRSYHRYRAGLRRRCLPHRAHLRR 596
HST R TSP+ + R RS HR+ G RR P+R HL R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSR 164
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 255 NKSPSVPYRPSRPDGGAFPRSRGTR 181
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,038
Number of Sequences: 5004
Number of extensions: 79644
Number of successful extensions: 300
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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