Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1346
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    33   0.061
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    28   1.3  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   3.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.0  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   3.0  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   7.0  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   7.0  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 299 SPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSEKNLYADI 478
           SP +R T+L+ H NA ++G          + +N N+F             PSE  L  D 
Sbjct: 85  SPESRPTLLYFHANAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTGSPSEAGLKIDS 144

Query: 479 DAAWQAL 499
             A + L
Sbjct: 145 QTALEYL 151


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 FTPDETGSKFSLTLTERAEWQYSERE 227
           FT +E  SKF   LT+  +W Y E E
Sbjct: 601 FTNEEESSKFKEMLTKAEDWLYEEGE 626


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 235 FSFSRSEYCHSARSVSVKE-NFDPVSSGV-NAYVGSGGRNANLAAIFLGHGGQQNRQQSS 62
           + F+     +++ S+++ + N D +++G+ N   G+GGRN N   +  G  G  + Q  S
Sbjct: 7   WDFANISGSNTSGSLNLNQLNLDNINNGLHNQEDGAGGRNENSERVGSGSPGSVSMQVLS 66

Query: 61  L 59
           L
Sbjct: 67  L 67


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 187 VKENFDPVSSGVNAYVGSGGRNANL 113
           ++ENFD     V AYV SG  N +L
Sbjct: 74  LQENFDSFFPNVEAYVESGNSNGDL 98


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 301 TATNKETGYLVAPRRSE*KPSMFSFSRSEYCHSARSVSVKENFDPVSSGVNAYVGSGGRN 122
           T +N ET Y+ +P   + KP+    + +    SA S   K    P +S  + +V S    
Sbjct: 270 TVSNSETSYVGSPALKQSKPNSLKSNNTSRKTSASSAITKPKARPHTSRHDEFVVSDDDE 329

Query: 121 AN 116
            N
Sbjct: 330 LN 331


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 573 IYCWYSSNALSIQNNVFRTNAIRVRNACHAASMSAY 466
           +Y W S++A SI++ +  TNA   +N  +  S S Y
Sbjct: 106 LYLWNSTSAKSIRSYIIPTNA-DPQNIIYEISQSGY 140


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 666 PSSLGVWKCYSHSGH 622
           PS+L  WKC +HS H
Sbjct: 445 PSNLRKWKCPNHSDH 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,944
Number of Sequences: 5004
Number of extensions: 65784
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)