Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1346
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 77 2e-14
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 74 1e-13
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 73 3e-13
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 70 2e-12
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 69 3e-12
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 68 7e-12
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 68 7e-12
08_01_0228 + 1832172-1832446,1832524-1832698 29 3.1
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324... 29 4.1
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 29 4.1
06_01_0994 + 7719974-7721323 29 5.5
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471... 29 5.5
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099 28 9.6
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 76.6 bits (180), Expect = 2e-14
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 GISPENIILYGQSIGTVPTVDLAVR-YEVGAVVLHSPLMSGMRVAFPNTKRTWFFRCISQ 687
G E IILYGQS+G+ PTVDLA R + + AVVLHSP++SG+RV +P KRT++F I +
Sbjct: 124 GAKEEEIILYGQSVGSGPTVDLASRLHRLRAVVLHSPILSGLRVMYP-VKRTYWFD-IYK 181
Query: 688 Y*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
K P++ PVL DEV+D+ HG
Sbjct: 182 NIDKIPQVTCPVL-IIHGTADEVVDWSHG 209
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/78 (41%), Positives = 45/78 (57%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
GN +A ++VR P+A T+L+SHGNA DLG + +L L + N+
Sbjct: 43 GNTVAAVYVR-HPDAATTLLYSHGNAADLGHLYQLFLHLSFNLRVNVLGYDYSGYGQSSG 101
Query: 446 KPSEKNLYADIDAAWQAL 499
KPSE N YADI+AA++ L
Sbjct: 102 KPSEHNTYADIEAAYKCL 119
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 73.7 bits (173), Expect = 1e-13
Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 475 HRCCVASVTNPNGISPENIILYGQSIGTVPTVDLAVRY-EVGAVVLHSPLMSGMRVAFPN 651
+RC V + G S ENIILYGQS+G+ PT+DLA R + AVVLHSP++SG+RV +P
Sbjct: 150 YRCLVETY----GASEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILSGLRVMYP- 204
Query: 652 TKRTWFFRCISQY*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
K T++F I + K P + PVL DEV+D HG
Sbjct: 205 VKHTYWFD-IYKNIDKIPLVRCPVL-VIHGTADEVVDCSHG 243
Score = 58.0 bits (134), Expect = 8e-09
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIF------XXXXXX 427
G ++ ++VR AR T+L+SHGNA DLGQM ++ L +N N+
Sbjct: 71 GTEVVAMYVR-QAGARLTLLYSHGNAADLGQMFELFVELSAHLNVNLMGIRIRRLYDYSG 129
Query: 428 XXXXXXKPSEKNLYADIDAAWQAL 499
KPSE N YADI+A ++ L
Sbjct: 130 YGQSSGKPSEHNTYADIEAVYRCL 153
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 72.5 bits (170), Expect = 3e-13
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 475 HRCCVASVTNPNGISPENIILYGQSIGTVPTVDLAVRY-EVGAVVLHSPLMSGMRVAFPN 651
+RC V + G + ENIILYGQS+G+ PT+DLA R + AVVLHSP++SG+RV +P
Sbjct: 136 YRCLVETY----GATEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILSGLRVMYP- 190
Query: 652 TKRTWFFRCISQY*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
K T++F I + K P + PVL DEV+D HG
Sbjct: 191 VKHTYWFD-IYKNIDKVPLVKCPVL-VIHGTADEVVDCSHG 229
Score = 71.3 bits (167), Expect = 8e-13
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
G ++ ++VR P AR T+L+SHGNA DLGQM ++ L + +N N+
Sbjct: 63 GTEVVAMYVR-QPGARLTLLYSHGNAADLGQMYELFVELSSHLNVNLMGYDYSGYGQSSG 121
Query: 446 KPSEKNLYADIDAAWQAL 499
KPSE+N Y+DI+AA++ L
Sbjct: 122 KPSEQNTYSDIEAAYRCL 139
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
G+K+ ++R +P AR T+L+SHGNA DLGQ+ ++ L + N+
Sbjct: 59 GSKVVAFYLR-NPAARLTVLYSHGNAADLGQLYDLFVQLKVNLKVNLMGYDYSGYGASTG 117
Query: 446 KPSEKNLYADIDAAWQALRTRMAL 517
KPSE+N YADI+A +Q L T +
Sbjct: 118 KPSEENTYADIEAVYQCLETEYGI 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 GISPENIILYGQSIGTVPTVDLAVRY-EVGAVVLHSPLMSGMRVAFPNTKRTWFFRCISQ 687
GIS E++ILYGQS+G+ PT+ LA R + VVLHS ++SG+RV + T+ F I +
Sbjct: 140 GISQEDLILYGQSVGSGPTLHLASRLPRLRGVVLHSAILSGLRVVC-HVNFTFCFD-IYK 197
Query: 688 Y*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
+K K+ PVL +D+V+++ HG
Sbjct: 198 NVKKIKKVKSPVL-VIHGTDDDVVNWSHG 225
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 105 IAAKLAFLPPEP-TYAFTPDE 164
+AA+ AF PPEP TYA DE
Sbjct: 10 LAARFAFFPPEPATYAVRKDE 30
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 69.3 bits (162), Expect = 3e-12
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 GISPENIILYGQSIGTVPTVDLAVR-YEVGAVVLHSPLMSGMRVAFPNTKRTWFFRCISQ 687
G E+IILYGQS+G+ PTVDLA + + + AVVLHSP++SG+RV + K WF I +
Sbjct: 37 GTREEDIILYGQSVGSGPTVDLAAQLHRIRAVVLHSPILSGLRVMYSVKKTYWF--DIYK 94
Query: 688 Y*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
+K P + PVL D+++D HG
Sbjct: 95 NIEKMPLVKSPVL-VIHGTNDDIVDCSHG 122
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 68.1 bits (159), Expect = 7e-12
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 496 VTNPNGISPENIILYGQSIGTVPTVDLAVRYE-VGAVVLHSPLMSGMRVAFPNTKRTWFF 672
+T GI PE++ILYGQS+G+ PT+ LA R E + VVLHS ++SG+RV +P WF
Sbjct: 133 LTKVYGIEPEDLILYGQSVGSGPTLHLASRLEKLRGVVLHSAILSGIRVLYPVKVTLWF- 191
Query: 673 RCISQY*QKYPKLLLPVLGDSWEPEDEVIDFFHGLR 780
I + K ++ PVL D+++DF HG R
Sbjct: 192 -DIFKNIDKIKQVDCPVL-VIHGTADDIVDFSHGKR 225
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/78 (41%), Positives = 41/78 (52%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
G ++ F R P+AR T+L+SHGNA DLGQM +L L + NI
Sbjct: 57 GTRVVAAFWR-HPSARLTLLYSHGNAADLGQMLGLFLELRAHLRVNIMSYDYSGYGASTG 115
Query: 446 KPSEKNLYADIDAAWQAL 499
KPSE N Y DI+A + L
Sbjct: 116 KPSEYNTYCDIEAVYDCL 133
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 105 IAAKLAFLPPE-PTYAFTPDETG 170
+AA+LAF PPE PTY +E G
Sbjct: 8 VAARLAFFPPEPPTYELVAEEGG 30
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 68.1 bits (159), Expect = 7e-12
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 GISPENIILYGQSIGTVPTVDLAVRY-EVGAVVLHSPLMSGMRVAFPNTKRTWFFRCISQ 687
G++ E+IILYGQS+G+ PT+DLA R + VVLHSP++SG+RV +P KRT++F I +
Sbjct: 159 GVADEDIILYGQSVGSGPTIDLASRLPNLRGVVLHSPILSGLRVLYP-VKRTYWFD-IYK 216
Query: 688 Y*QKYPKLLLPVLGDSWEPEDEVIDFFHG 774
K + PVL D+V+D HG
Sbjct: 217 NIDKIGLVNCPVL-VIHGTSDDVVDCSHG 244
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = +2
Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
GN+I + VR A T+L+SHGNA DLGQM ++ L R+ N+F
Sbjct: 78 GNEIVGVHVR-HERASATLLYSHGNAADLGQMYGLFVELSRRLRINLFGYDYSGYGRSTG 136
Query: 446 KPSEKNLYADIDAAWQALRTR 508
KP+E N YADI+AA+ L+ +
Sbjct: 137 KPTECNTYADIEAAYNCLKEK 157
>08_01_0228 + 1832172-1832446,1832524-1832698
Length = 149
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 777 KSVEEVNYLILGFP*IPKNWKK*LWVFLSILGNASKKPSSLGVWKCYS 634
K E+ N L P IP+ +K W F ++ K + V +C S
Sbjct: 75 KKTEQCNLGALALPAIPRYLQKGAWAFNDLMATVMLKAEEVAVLRCRS 122
>06_01_1178 +
10131844-10131993,10132103-10132171,10132446-10132451,
10132571-10132930,10133983-10134201,10134905-10135054
Length = 317
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 205 SARSVSVKENFDPVSSGVNAYVGSGGRNANLAAIFLGHGGQQNRQQSSLKL 53
S +SVSVK+ DP +G + S G N +A + L G + + + + L
Sbjct: 84 SPQSVSVKKRRDPGETGKKSTADSNGENGAVAPVGLLGGENKPKDKDEIVL 134
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -1
Query: 286 ETGYLVAPRRSE*KP-SMFSFSRSEYCHSAR---SVSVKENFDPVSSGVNAYVGSGGRNA 119
E L R+ KP F +E S+R SVS KENFD ++S + GS R+
Sbjct: 43 EAARLQKSTRASPKPRKKFEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRST 102
Query: 118 NLAAIFLGHGGQQNRQQSSLK 56
+ G +QQ + K
Sbjct: 103 EQGRDYTGRVASYEQQQRAFK 123
>06_01_0994 + 7719974-7721323
Length = 449
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 772 RGRSQLPHPRVPMNPQELEEVTLGI 698
RG ++P PRVP+ + EEV G+
Sbjct: 111 RGVERVPTPRVPVGEDDAEEVVAGV 135
>02_02_0675 +
12845980-12846111,12846211-12846363,12846954-12847100,
12847372-12847656
Length = 238
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 159 DETGSKFSLTLTERAEWQYSEREKENIEGFY 251
DET SK + + R ++Q SE +E+++G Y
Sbjct: 85 DETVSKLTKAIKWRQDFQVSELSEESVKGLY 115
>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
Length = 575
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 129 PPEPTYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYSERRGAT 272
PP P A PD+ S+ + +E +W RE E + R+ AT
Sbjct: 363 PPPPDAAAAPDDDPSEHLVPPSELPQWIPCARELEEAGVTFRPRKDAT 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,374,444
Number of Sequences: 37544
Number of extensions: 409121
Number of successful extensions: 1020
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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