Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1346
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)         136   1e-32
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)                      29   3.2  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)
          Length = 253

 Score =  136 bits (330), Expect = 1e-32
 Identities = 61/84 (72%), Positives = 67/84 (79%)
 Frame = +2

Query: 266 GNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXX 445
           GN I C+F+RCSPNARFT+LFSHGNAVDLGQMSSFY+GLGTRINCNIF            
Sbjct: 75  GNHIGCMFIRCSPNARFTLLFSHGNAVDLGQMSSFYVGLGTRINCNIFSYDYSGYGVSTG 134

Query: 446 KPSEKNLYADIDAAWQALRTRMAL 517
           KPSEKNLY+DIDAAW ALRTR  +
Sbjct: 135 KPSEKNLYSDIDAAWNALRTRYGI 158



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = +3

Query: 102 KIAAKLAFLPPEPTYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGF 248
           KIAAKLAFLPPEPTY+      G + +L L+E++EWQY ++E ++IE F
Sbjct: 21  KIAAKLAFLPPEPTYSLQDLSEGGQ-ALHLSEKSEWQYGQKELDSIEAF 68



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +1

Query: 511 GISPENIILYGQSIGTVPTVDLAVRYEVGAVVLHSPLM 624
           GISPENI+LYGQSIGTVPT+DLA   E  + ++ SP++
Sbjct: 157 GISPENIVLYGQSIGTVPTIDLASSIEKVSKIV-SPVL 193


>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = -1

Query: 328 EQYSETSIWTATNKETGYLVAPRRSE*KPSMFSFSRSEYC----HSARSVSVKENFDPVS 161
           +++S T + + T+ E   +V PR+   + + F   RS Y      + +S SV+EN  P+ 
Sbjct: 301 DKHSGTLLPSFTSLEKHNIVTPRQRGIQANKFHL-RSRYMIDQTFTQQSDSVEENCSPLR 359

Query: 160 SGVNAYVGSGGRNANLAAIFLGHGGQQNRQQSSLKLN 50
             V   VGS G +            Q +R    + LN
Sbjct: 360 QKVREIVGSKGTSVETLPENTSSSPQDDRSNDQVFLN 396


>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
          Length = 276

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -1

Query: 328 EQYSETSIWTATNKETGYLVAPRRSE*KPSMFSFSRSEYC----HSARSVSVKENFDPVS 161
           +++S T + + T+ E   +V PR+   + + F   RS Y      + +S SV+EN  P+ 
Sbjct: 92  DKHSGTLLPSFTSLEKHNIVTPRQRGIQANKFHL-RSRYMIDQTFTQQSDSVEENCSPLR 150

Query: 160 SGVNAYVGSGGRNAN 116
             V   VGS G   N
Sbjct: 151 QKVREIVGSKGTQIN 165


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 591 FITHCQIYCWYSSNALSIQNNVFRTNAIRVRNACHAASMSAYKFFSEGF 445
           FI  C   C+ SS   +   N  RTN+    +  H+   +A    S+GF
Sbjct: 664 FIKSCSAECFDSSTVTTTDVNSIRTNSDENASKRHSLDTTAIPRMSDGF 712


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 311  RFTILFSHGNAVDLG-QMSSFYLGLGTRI 394
            R T + SHGN VDLG Q  S  L L T++
Sbjct: 2298 RLTSIHSHGNIVDLGAQRISDGLALNTKV 2326


>SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 129 PPEPTYAFTPDETGSKFSLTLTER--AEWQYSEREKENIE 242
           PP  T  F PD    KFSL   +   A+WQ   +E  + E
Sbjct: 201 PPSTTLEFRPDMVSQKFSLKRYDARPAKWQSMGKEGHSSE 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,813,792
Number of Sequences: 59808
Number of extensions: 473458
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)