Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1345
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     45   1e-05
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    34   0.027
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    33   0.063
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.78 
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    28   1.4  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    27   4.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.2  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   4.2  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   5.5  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   7.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   7.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   7.3  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   9.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.6  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +2

Query: 278 LVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFA 457
           L+SP   +L +     Q Q +R  T   Y     GTGF F++N YF Y YS  LE  +FA
Sbjct: 38  LLSPSMLVLHYPLVVRQKQWYRLFTNYLY----AGTGFDFIMNIYFFYQYSTYLENFVFA 93

Query: 458 GKPADYFYMLL 490
                Y   L+
Sbjct: 94  RNAKKYIIYLV 104


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 23/102 (22%), Positives = 40/102 (39%)
 Frame = +2

Query: 173 ILENVGIPRLVQWCTVFHQILDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLT 352
           I+EN  I  L Q C  ++ +L D+    +   +  L   Y  ++D YY+ ++ +    + 
Sbjct: 75  IIENSNIDELKQQC-FYYYLLKDWEKSETYSEQVSLPKNYQHLMDGYYYLDRLKFEEAIN 133

Query: 353 ALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYF 478
            L    + P      +   Y    Y   +    F G P D F
Sbjct: 134 HLLLPDVLPNFPDKIIETLYSNEKYKFLIRFVSFVGPPLDTF 175


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -3

Query: 470  QLASLQTCRSQVFESSCTKSNSLSGNEILCLDLLDSKTKLLMDAISEI 327
            ++  L TC + +FES C+++ +   N + C+D   +  K+L++   +I
Sbjct: 1097 KMLDLTTCINGIFESLCSENENTRSNALSCIDHYLNAHKMLLNTTLDI 1144


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 569 NTESTIGSINTGNLTSNPMINSTPN*TKACRNSQLASLQ 453
           NT+  + +++ GN   N  +N+ PN T    NS+ A ++
Sbjct: 132 NTQQQVSNVSHGNFKPNSSVNTEPN-TSILSNSKYAGIK 169


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 283 HKPKFTKQTHTIVKVIQYLVKNGTPLYQSRNSDIFQDFLIISLAQTDL 140
           H P  T +THT+V++IQ LV     +     S++  D ++  L+ + +
Sbjct: 231 HGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGI 278


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 271 IWACEPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISFPDKLLLFVQLLSKT 438
           IW C+  +FY+  ++F+ S S   S+       N+    I  P  + +    + +T
Sbjct: 213 IWLCDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGAPQPVTVIRNQVKQT 268


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 629 LRLCIY-LGVLLAFNLVISGRWDNGAPRHSNWSLKHSSFXSNPFKN 763
           L + +Y LGVL+A  L+++    N   RHS WSL+  +   + +K+
Sbjct: 56  LTMTLYELGVLIADQLLLN----NEETRHSEWSLQIRTIFYDKYKD 97


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 302 LDFYYFFNQFQIWRPL----TALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPA 469
           LD++  F+  + W+ L    + L+  P N    F  L+   F+ +Y       +FA +  
Sbjct: 595 LDYFLLFD-LKFWKRLRGLLSKLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFADREP 653

Query: 470 DYFYMLL 490
           D+  M L
Sbjct: 654 DHSVMFL 660


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 572 YNTESTIGSINTGNLTSNPMINSTPN*TKACRNSQLASLQTCRSQVFESSCTK-SNSLSG 396
           +   STI SI+  NLT NP + S  +  KA     L    T R +    +CT+ +  L+G
Sbjct: 110 FKQSSTIPSISKSNLT-NPPLESEKSSDKAL----LTRPATSRRRCCHPTCTRITLRLAG 164

Query: 395 NEILCLDLLDSKTKLLMD 342
           N + C     +  +L+ D
Sbjct: 165 NCLHCNGRFCAAHRLMED 182


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 111 DIYDIVLCNNKSVCANEIIRKSWKMSEFRDWYNG 212
           D+Y+  + +N+S    +II ++WK +E  + + G
Sbjct: 43  DVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKWVG 76


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 338 WRPLTALFYYPINPGTGFHFLINCYFLYNY 427
           W+ L AL   PI     F+ L+ CY++Y+Y
Sbjct: 446 WKLLVALGMTPIL--YSFYALLCCYYIYSY 473


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 566 TESTIGSINTGNLTSNPMINSTPN*TKACRNSQLASLQTCRSQVFESS 423
           + ST  SI T   T+   I  TP  T     +Q   +Q C S  +++S
Sbjct: 843 SSSTTSSI-TPTPTTTSSITPTPTTTSTTTTAQSTGMQLCGSNYYDAS 889


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 170  KILENVGIPRLVQWCTVFH 226
            +ILE  G+ + VQWC   H
Sbjct: 1095 EILETRGVKKTVQWCEEMH 1113


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 386 GFHFLINCYFLYNYSQRLETGMFAGKPADYFY 481
           GFH LIN YF  +Y   +   + A   +DY Y
Sbjct: 10  GFHRLINFYFYPSYHDTVVHNL-AFSTSDYIY 40


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 468 LTISTCFCLIGCAVYHWITCQI-ASINGPDGTLGIICM 578
           L IS  + LIGCA+  W++  +   +   +  +G++C+
Sbjct: 337 LIISHIYLLIGCAIPIWLSNALKGPVASVELLVGVLCL 374


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 569 NTESTIGSINTGNLTSNPMINSTPN*TKACRNSQLASLQT-CRSQVFESSCTKSNSL 402
           +T STI +      TS+P+  S P+ + A   +  +SL T    + F  + T ++S+
Sbjct: 300 STPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEYFTKTITDTSSI 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,636
Number of Sequences: 5004
Number of extensions: 77713
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)